Analysis of interatomic Contacts of Structural Units in PDB entry:
9QJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QJT entry

There are 2 chains in PDB entry 9QJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 3SER 591
A
 GLN 3SER 591
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 9QJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 9Right-handed alpha
Helix 2
AA2
B
20 23Right-handed 310
Helix 3
AA3
B
24 33Right-handed alpha
Helix 4
AA4
B
56 58Right-handed 310
Helix 5
AA5
B
59 71Right-handed alpha
Helix 6
AA6
B
81 97Right-handed alpha
Helix 7
AA7
B
104 116Right-handed alpha
Helix 8
AA8
B
117 147Right-handed alpha
Helix 9
AA9
B
155 176Right-handed alpha
Helix 10
AB1
B
177 189Right-handed alpha
Helix 11
AB2
B
210 246Right-handed alpha
Helix 12
AB3
B
251 256Right-handed alpha
Helix 13
AB4
B
257 278Right-handed alpha
Helix 14
AB5
B
278 287Right-handed alpha
Helix 15
AB6
B
290 325Right-handed alpha
Helix 16
AB7
B
358 369Right-handed alpha
Helix 17
AB8
B
369 379Right-handed alpha
Helix 18
AB9
B
381 395Right-handed alpha
Helix 19
AC1
B
400 411Right-handed alpha
Helix 20
AC2
B
413 429Right-handed alpha
Helix 21
AC3
B
430 433Right-handed 310
Helix 22
AC4
B
436 455Right-handed alpha
Helix 23
AC5
B
460 483Right-handed alpha
Helix 24
AC6
B
509 534Right-handed alpha
Helix 25
AC7
B
562 590Right-handed alpha
Helix 26
AC8
A
27 33Right-handed alpha
Helix 27
AC9
A
61 71Right-handed alpha
Helix 28
AD1
A
81 97Right-handed alpha
Helix 29
AD2
A
104 116Right-handed alpha
Helix 30
AD3
A
117 147Right-handed alpha
Helix 31
AD4
A
155 176Right-handed alpha
Helix 32
AD5
A
177 186Right-handed alpha
Helix 33
AD6
A
208 217Right-handed alpha
Helix 34
AD7
A
218 246Right-handed alpha
Helix 35
AD8
A
262 277Right-handed alpha
Helix 36
AD9
A
278 287Right-handed alpha
Helix 37
AE1
A
294 325Right-handed alpha
Helix 38
AE2
A
358 369Right-handed alpha
Helix 39
AE3
A
369 377Right-handed alpha
Helix 40
AE4
A
414 428Right-handed alpha
Helix 41
AE5
A
429 433Right-handed 310
Helix 42
AE6
A
436 455Right-handed alpha
Helix 43
AE7
A
456 458Right-handed 310
Helix 44
AE8
A
460 483Right-handed alpha
Helix 45
AE9
A
509 533Right-handed alpha
Helix 46
AF1
A
562 591Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9QJT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
48 53anti-parallel
Strand 3
B
12 17anti-parallel
Strand 4
B
73 77anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
12 16anti-parallel
Strand 4
A
73 77anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il