Analysis of interatomic Contacts of Structural Units in PDB entry:
9QKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QKZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 9QKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 98LYS 215
B
 PRO 427TYR 594
B
 PRO 596THR 751
B
 PRO 753TYR 762
C
 SER 67LYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 9QKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 111Right-handed alpha
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
A
128 146Right-handed alpha
Helix 4
AA4
A
148 156Right-handed alpha
Helix 5
AA5
A
163 173Right-handed alpha
Helix 6
AA6
A
192 195Right-handed 310
Helix 7
AA7
A
196 215Right-handed alpha
Helix 8
AA8
B
434 436Right-handed 310
Helix 9
AA9
B
479 492Right-handed alpha
Helix 10
AB1
B
523 530Right-handed alpha
Helix 11
AB2
B
535 556Right-handed alpha
Helix 12
AB3
B
564 566Right-handed 310
Helix 13
AB4
B
580 584Right-handed 310
Helix 14
AB5
B
600 604Right-handed 310
Helix 15
AB6
B
605 610Right-handed alpha
Helix 16
AB7
B
617 634Right-handed alpha
Helix 17
AB8
B
642 655Right-handed alpha
Helix 18
AB9
B
664 667Right-handed 310
Helix 19
AC1
B
668 674Right-handed alpha
Helix 20
AC2
B
683 689Right-handed 310
Helix 21
AC3
B
693 704Right-handed alpha
Helix 22
AC4
B
713 719Right-handed alpha
Helix 23
AC5
B
720 724Right-handed 310
Helix 24
AC6
B
731 735Right-handed 310
Helix 25
AC7
C
70 92Right-handed alpha
Helix 26
AC8
C
95 113Right-handed alpha
Helix 27
AC9
C
119 135Right-handed alpha
Helix 28
AD1
C
140 156Right-handed alpha
Helix 29
AD2
C
166 187Right-handed alpha
Helix 30
AD3
C
196 207Right-handed alpha
Helix 31
AD4
C
212 227Right-handed alpha
Helix 32
AD5
C
230 235Right-handed alpha
Helix 33
AD6
C
236 252Right-handed alpha
Helix 34
AD7
C
261 267Right-handed 310
Helix 35
AD8
C
269 285Right-handed alpha
Helix 36
AD9
C
292 302Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9QKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 446first strand
Strand 2
B
451 457anti-parallel
Strand 3
B
463 469anti-parallel
Strand 4
B
512 517anti-parallel
Strand 5
B
500 505anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
521 522first strand
Strand 2
B
568 570anti-parallel
Strand 3
B
576 578anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
558 559first strand
Strand 2
B
585 586anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il