Analysis of interatomic Contacts of Structural Units in PDB entry:
9QLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QLH entry

There are 3 chains in PDB entry 9QLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1306
P
 G 6 G 30
T
 C -3 C 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 9QLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 36Right-handed alpha
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
69 76Right-handed alpha
Helix 4
AA4
A
142 150Right-handed alpha
Helix 5
AA5
A
179 185Right-handed alpha
Helix 6
AA6
A
210 212Right-handed 310
Helix 7
AA7
A
213 221Right-handed alpha
Helix 8
AA8
A
264 286Right-handed alpha
Helix 9
AA9
A
294 306Right-handed alpha
Helix 10
AB1
A
315 322Right-handed alpha
Helix 11
AB2
A
342 374Right-handed alpha
Helix 12
AB3
A
382 389Right-handed alpha
Helix 13
AB4
A
391 398Right-handed alpha
Helix 14
AB5
A
440 443Right-handed 310
Helix 15
AB6
A
444 456Right-handed alpha
Helix 16
AB7
A
464 476Right-handed alpha
Helix 17
AB8
A
479 490Right-handed alpha
Helix 18
AB9
A
494 498Right-handed 310
Helix 19
AC1
A
500 521Right-handed alpha
Helix 20
AC2
A
531 548Right-handed alpha
Helix 21
AC3
A
554 577Right-handed alpha
Helix 22
AC4
A
578 609Right-handed alpha
Helix 23
AC5
A
616 626Right-handed alpha
Helix 24
AC6
A
633 656Right-handed alpha
Helix 25
AC7
A
663 670Right-handed alpha
Helix 26
AC8
A
675 692Right-handed alpha
Helix 27
AC9
A
702 724Right-handed alpha
Helix 28
AD1
A
728 743Right-handed alpha
Helix 29
AD2
A
745 754Right-handed alpha
Helix 30
AD3
A
759 771Right-handed alpha
Helix 31
AD4
A
775 789Right-handed alpha
Helix 32
AD5
A
795 800Right-handed alpha
Helix 33
AD6
A
802 822Right-handed alpha
Helix 34
AD7
A
829 852Right-handed alpha
Helix 35
AD8
A
856 871Right-handed alpha
Helix 36
AD9
A
881 904Right-handed alpha
Helix 37
AE1
A
929 936Right-handed alpha
Helix 38
AE2
A
962 965Right-handed 310
Helix 39
AE3
A
971 975Right-handed 310
Helix 40
AE4
A
991 1001Right-handed alpha
Helix 41
AE5
A
1003 1013Right-handed alpha
Helix 42
AE6
A
1015 1021Right-handed alpha
Helix 43
AE7
A
1021 1027Right-handed alpha
Helix 44
AE8
A
1046 1059Right-handed alpha
Helix 45
AE9
A
1073 1085Right-handed alpha
Helix 46
AF1
A
1093 1105Right-handed alpha
Helix 47
AF2
A
1127 1161Right-handed alpha
Helix 48
AF3
A
1182 1195Right-handed alpha
Helix 49
AF4
A
1195 1203Right-handed alpha
Helix 50
AF5
A
1242 1257Right-handed alpha
Helix 51
AF6
A
1288 1293Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9QLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
3 8parallel
Strand 3
A
64 67parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 209first strand
Strand 2
A
256 260parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
228 234anti-parallel
Strand 5
A
290 292parallel
Strand 6
A
313 314parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
942 944anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 949first strand
Strand 2
A
959 960anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1165 1168first strand
Strand 2
A
1173 1179anti-parallel
Strand 3
A
982 990anti-parallel
Strand 4
A
1207 1213anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1235 1240first strand
Strand 2
A
1296 1304anti-parallel
Strand 3
A
1258 1266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il