Analysis of interatomic Contacts of Structural Units in PDB entry:
9QLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QLI entry

There is 1 chain in PDB entry 9QLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9QLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 36Right-handed alpha
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
69 77Right-handed alpha
Helix 4
AA4
A
142 147Right-handed alpha
Helix 5
AA5
A
172 177Right-handed alpha
Helix 6
AA6
A
180 187Right-handed alpha
Helix 7
AA7
A
188 197Right-handed alpha
Helix 8
AA8
A
213 222Right-handed alpha
Helix 9
AA9
A
264 286Right-handed alpha
Helix 10
AB1
A
294 306Right-handed alpha
Helix 11
AB2
A
316 322Right-handed alpha
Helix 12
AB3
A
327 337Right-handed alpha
Helix 13
AB4
A
344 374Right-handed alpha
Helix 14
AB5
A
382 388Right-handed alpha
Helix 15
AB6
A
391 400Right-handed alpha
Helix 16
AB7
A
435 440Right-handed alpha
Helix 17
AB8
A
444 456Right-handed alpha
Helix 18
AB9
A
460 475Right-handed alpha
Helix 19
AC1
A
479 490Right-handed alpha
Helix 20
AC2
A
498 521Right-handed alpha
Helix 21
AC3
A
531 549Right-handed alpha
Helix 22
AC4
A
554 577Right-handed alpha
Helix 23
AC5
A
578 609Right-handed alpha
Helix 24
AC6
A
616 627Right-handed alpha
Helix 25
AC7
A
630 657Right-handed alpha
Helix 26
AC8
A
662 671Right-handed alpha
Helix 27
AC9
A
675 692Right-handed alpha
Helix 28
AD1
A
702 724Right-handed alpha
Helix 29
AD2
A
728 743Right-handed alpha
Helix 30
AD3
A
745 753Right-handed alpha
Helix 31
AD4
A
777 790Right-handed alpha
Helix 32
AD5
A
794 798Right-handed 310
Helix 33
AD6
A
808 822Right-handed alpha
Helix 34
AD7
A
830 851Right-handed alpha
Helix 35
AD8
A
861 869Right-handed alpha
Helix 36
AD9
A
881 904Right-handed alpha
Helix 37
AE1
A
962 965Right-handed 310
Helix 38
AE2
A
969 975Right-handed 310
Helix 39
AE3
A
991 1001Right-handed alpha
Helix 40
AE4
A
1003 1012Right-handed alpha
Helix 41
AE5
A
1015 1026Right-handed alpha
Helix 42
AE6
A
1030 1034Right-handed 310
Helix 43
AE7
A
1040 1059Right-handed alpha
Helix 44
AE8
A
1062 1071Right-handed alpha
Helix 45
AE9
A
1073 1088Right-handed alpha
Helix 46
AF1
A
1088 1105Right-handed alpha
Helix 47
AF2
A
1126 1161Right-handed alpha
Helix 48
AF3
A
1182 1195Right-handed alpha
Helix 49
AF4
A
1195 1202Right-handed alpha
Helix 50
AF5
A
1243 1257Right-handed alpha
Helix 51
AF6
A
1288 1293Right-handed alpha
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There are 7 sheets in PDB entry 9QLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
4 6parallel
Strand 3
A
65 67parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
256 260parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
228 234anti-parallel
Strand 5
A
290 292parallel
Strand 6
A
313 314parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
942 944anti-parallel
Strand 3
A
907 909anti-parallel
Strand 4
A
927 928anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 949first strand
Strand 2
A
959 960anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1164 1169first strand
Strand 2
A
1173 1179anti-parallel
Strand 3
A
982 989anti-parallel
Strand 4
A
1208 1213anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1108 1110first strand
Strand 2
A
1117 1119anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1219 1226first strand
Strand 2
A
1232 1242anti-parallel
Strand 3
A
1296 1304anti-parallel
Strand 4
A
1258 1267anti-parallel
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