Analysis of interatomic Contacts of Structural Units in PDB entry:
9QM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QM1 entry

There are 2 chains in PDB entry 9QM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 36	VAL 1005
B	GLY 2	ALA 215

There are 58 helices in PDB entry 9QM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	41	Right-handed 310
Helix 2	AA2	A	90	92	Right-handed 310
Helix 3	AA3	A	93	99	Right-handed alpha
Helix 4	AA4	A	121	140	Right-handed alpha
Helix 5	AA5	A	166	180	Right-handed alpha
Helix 6	AA6	A	187	192	Right-handed 310
Helix 7	AA7	A	195	204	Right-handed alpha
Helix 8	AA8	A	212	219	Right-handed 310
Helix 9	AA9	A	228	233	Right-handed alpha
Helix 10	AB1	A	236	246	Right-handed alpha
Helix 11	AB2	A	260	264	Right-handed 310
Helix 12	AB3	A	274	289	Right-handed alpha
Helix 13	AB4	A	293	301	Right-handed alpha
Helix 14	AB5	A	330	334	Right-handed 310
Helix 15	AB6	A	354	363	Right-handed alpha
Helix 16	AB7	A	364	366	Right-handed 310
Helix 17	AB8	A	367	376	Right-handed alpha
Helix 18	AB9	A	378	391	Right-handed alpha
Helix 19	AC1	A	392	394	Right-handed 310
Helix 20	AC2	A	404	409	Right-handed alpha
Helix 21	AC3	A	412	427	Right-handed alpha
Helix 22	AC4	A	445	452	Right-handed alpha
Helix 23	AC5	A	459	463	Right-handed 310
Helix 24	AC6	A	472	479	Right-handed alpha
Helix 25	AC7	A	490	493	Right-handed 310
Helix 26	AC8	A	494	507	Right-handed alpha
Helix 27	AC9	A	511	516	Right-handed alpha
Helix 28	AD1	A	527	531	Right-handed 310
Helix 29	AD2	A	532	541	Right-handed alpha
Helix 30	AD3	A	554	559	Right-handed alpha
Helix 31	AD4	A	561	569	Right-handed alpha
Helix 32	AD5	A	570	572	Right-handed 310
Helix 33	AD6	A	587	591	Right-handed 310
Helix 34	AD7	A	595	599	Right-handed 310
Helix 35	AD8	A	610	614	Right-handed 310
Helix 36	AD9	A	640	659	Right-handed alpha
Helix 37	AE1	A	664	669	Right-handed alpha
Helix 38	AE2	A	672	676	Right-handed 310
Helix 39	AE3	A	682	692	Right-handed alpha
Helix 40	AE4	A	713	717	Right-handed 310
Helix 41	AE5	A	727	731	Right-handed 310
Helix 42	AE6	A	741	743	Right-handed 310
Helix 43	AE7	A	749	754	Right-handed alpha
Helix 44	AE8	A	773	778	Right-handed 310
Helix 45	AE9	A	786	790	Right-handed 310
Helix 46	AF1	A	894	897	Right-handed 310
Helix 47	AF2	A	898	905	Right-handed alpha
Helix 48	AF3	A	913	920	Right-handed alpha
Helix 49	AF4	A	977	981	Right-handed 310
Helix 50	AF5	B	10	12	Right-handed 310
Helix 51	AF6	B	16	27	Right-handed alpha
Helix 52	AF7	B	80	90	Right-handed alpha
Helix 53	AF8	B	107	112	Right-handed 310
Helix 54	AF9	B	113	120	Right-handed alpha
Helix 55	AG1	B	141	147	Right-handed alpha
Helix 56	AG2	B	151	157	Right-handed alpha
Helix 57	AG3	B	167	182	Right-handed alpha
Helix 58	AG4	B	205	210	Right-handed alpha

There are 16 sheets in PDB entry 9QM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	49	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	A	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	603	607	anti-parallel
Strand 3	A	574	579	parallel
Strand 4	A	547	551	parallel
Strand 5	A	150	160	parallel
Strand 6	A	141	144	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	603	607	anti-parallel
Strand 3	A	574	579	parallel
Strand 4	A	547	551	parallel
Strand 5	A	150	160	parallel
Strand 6	A	182	186	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	268	first strand
Strand 2	A	249	253	parallel
Strand 3	A	221	225	parallel
Strand 4	A	399	403	parallel
Strand 5	A	437	439	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	317	318	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	327	328	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	619	first strand
Strand 2	A	624	628	anti-parallel
Strand 3	A	763	764	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	700	first strand
Strand 2	A	703	705	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	735	first strand
Strand 2	A	738	739	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	795	first strand
Strand 2	A	798	801	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	883	first strand
Strand 2	A	959	963	parallel
Strand 3	A	909	912	anti-parallel
Strand 4	A	935	943	parallel
Strand 5	A	927	932	anti-parallel
Strand 6	A	998	1004	anti-parallel
Strand 7	A	878	883	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	952	first strand
Strand 2	A	955	957	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	3	8	anti-parallel
Strand 3	B	198	202	parallel
Strand 4	B	189	190	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	58	first strand
Strand 2	B	66	71	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	103	105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	135	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QM1