Analysis of interatomic Contacts of Structural Units in PDB entry:
9QM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QM3 entry

There is 1 chain in PDB entry 9QM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26HIS 565
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9QM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
77 87Right-handed alpha
Helix 3
AA3
A
89 95Right-handed alpha
Helix 4
AA4
A
141 155Right-handed alpha
Helix 5
AA5
A
203 209Right-handed alpha
Helix 6
AA6
A
238 242Right-handed 310
Helix 7
AA7
A
283 296Right-handed alpha
Helix 8
AA8
A
329 331Right-handed 310
Helix 9
AA9
A
340 362Right-handed alpha
Helix 10
AB1
A
366 370Right-handed 310
Helix 11
AB2
A
371 397Right-handed alpha
Helix 12
AB3
A
410 417Right-handed alpha
Helix 13
AB4
A
466 469Right-handed 310
Helix 14
AB5
A
482 496Right-handed alpha
Helix 15
AB6
A
515 522Right-handed alpha
Helix 16
AB7
A
547 560Right-handed alpha
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There are 6 sheets in PDB entry 9QM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
59 61parallel
Strand 3
A
31 38parallel
Strand 4
A
187 197parallel
Strand 5
A
174 181anti-parallel
Strand 6
A
163 171anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
59 61parallel
Strand 3
A
31 38parallel
Strand 4
A
187 197parallel
Strand 5
A
325 327parallel
Strand 6
A
321 322anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
137 140anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
248 252parallel
Strand 4
A
255 259anti-parallel
Strand 5
A
265 271anti-parallel
Strand 6
A
213 228anti-parallel
Strand 7
A
303 317anti-parallel
Strand 8
A
333 334anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 456first strand
Strand 2
A
462 464anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
473 477parallel
Strand 3
A
528 531anti-parallel
Strand 4
A
537 541anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il