Analysis of interatomic Contacts of Structural Units in PDB entry:
9QMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QMI entry

There are 2 chains in PDB entry 9QMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6ARG 355
B
 ASP 6ARG 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9QMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 37Right-handed alpha
Helix 2
AA2
A
68 78Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
123 125Right-handed 310
Helix 5
AA5
A
139 144Right-handed alpha
Helix 6
AA6
A
174 187Right-handed alpha
Helix 7
AA7
A
229 238Right-handed alpha
Helix 8
AA8
A
251 262Right-handed alpha
Helix 9
AA9
A
271 277Right-handed alpha
Helix 10
AB1
A
277 282Right-handed alpha
Helix 11
AB2
A
288 296Right-handed alpha
Helix 12
AB3
A
339 355Right-handed alpha
Helix 13
AB4
B
29 37Right-handed alpha
Helix 14
AB5
B
68 78Right-handed alpha
Helix 15
AB6
B
90 101Right-handed alpha
Helix 16
AB7
B
123 125Right-handed 310
Helix 17
AB8
B
139 144Right-handed alpha
Helix 18
AB9
B
174 187Right-handed alpha
Helix 19
AC1
B
229 238Right-handed alpha
Helix 20
AC2
B
251 262Right-handed alpha
Helix 21
AC3
B
271 277Right-handed alpha
Helix 22
AC4
B
277 282Right-handed alpha
Helix 23
AC5
B
288 296Right-handed alpha
Helix 24
AC6
B
339 355Right-handed alpha
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There are 6 sheets in PDB entry 9QMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
80 88parallel
Strand 4
A
14 23anti-parallel
Strand 5
A
58 63parallel
Strand 6
A
50 55anti-parallel
Strand 7
A
40 45anti-parallel
Strand 8
A
145 147anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 166first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
324 330parallel
Strand 4
A
308 315anti-parallel
Strand 5
A
298 303anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
216 221parallel
Strand 3
A
205 209anti-parallel
Strand 4
A
189 190anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
127 131anti-parallel
Strand 3
B
80 88parallel
Strand 4
B
14 23anti-parallel
Strand 5
B
58 63parallel
Strand 6
B
50 55anti-parallel
Strand 7
B
40 45anti-parallel
Strand 8
B
145 147anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 166first strand
Strand 2
B
244 248anti-parallel
Strand 3
B
324 330parallel
Strand 4
B
308 315anti-parallel
Strand 5
B
298 303anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
216 221parallel
Strand 3
B
205 209anti-parallel
Strand 4
B
189 190anti-parallel
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