Analysis of interatomic Contacts of Structural Units in PDB entry:
9QN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QN5 entry

There are 4 chains in PDB entry 9QN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 11	PRO 345
B	GLY 6	ASP 549
C	ILE 11	PRO 345
D	GLY 6	GLY 548

There are 83 helices in PDB entry 9QN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	19	Right-handed alpha
Helix 2	AA2	A	19	36	Right-handed alpha
Helix 3	AA3	A	45	59	Right-handed alpha
Helix 4	AA4	A	92	94	Right-handed 310
Helix 5	AA5	A	95	102	Right-handed alpha
Helix 6	AA6	A	114	118	Right-handed 310
Helix 7	AA7	A	119	124	Right-handed alpha
Helix 8	AA8	A	135	149	Right-handed alpha
Helix 9	AA9	A	215	221	Right-handed alpha
Helix 10	AB1	A	226	234	Right-handed alpha
Helix 11	AB2	A	238	254	Right-handed alpha
Helix 12	AB3	A	258	260	Right-handed 310
Helix 13	AB4	A	261	280	Right-handed alpha
Helix 14	AB5	A	283	287	Right-handed 310
Helix 15	AB6	A	288	295	Right-handed 310
Helix 16	AB7	A	299	320	Right-handed alpha
Helix 17	AB8	B	8	18	Right-handed alpha
Helix 18	AB9	B	26	40	Right-handed alpha
Helix 19	AC1	B	53	59	Right-handed 310
Helix 20	AC2	B	64	68	Right-handed 310
Helix 21	AC3	B	71	84	Right-handed alpha
Helix 22	AC4	B	102	107	Right-handed alpha
Helix 23	AC5	B	118	133	Right-handed alpha
Helix 24	AC6	B	171	177	Right-handed alpha
Helix 25	AC7	B	181	198	Right-handed alpha
Helix 26	AC8	B	201	205	Right-handed 310
Helix 27	AC9	B	212	216	Right-handed 310
Helix 28	AD1	B	240	247	Right-handed alpha
Helix 29	AD2	B	250	260	Right-handed alpha
Helix 30	AD3	B	260	268	Right-handed alpha
Helix 31	AD4	B	269	274	Right-handed 310
Helix 32	AD5	B	283	289	Right-handed alpha
Helix 33	AD6	B	307	311	Right-handed 310
Helix 34	AD7	B	314	337	Right-handed alpha
Helix 35	AD8	B	348	366	Right-handed alpha
Helix 36	AD9	B	372	382	Right-handed alpha
Helix 37	AE1	B	387	406	Right-handed alpha
Helix 38	AE2	B	407	408	Right-handed 310
Helix 39	AE3	B	409	412	Right-handed 310
Helix 40	AE4	B	460	468	Right-handed alpha
Helix 41	AE5	B	498	502	Right-handed 310
Helix 42	AE6	B	505	510	Right-handed 310
Helix 43	AE7	C	12	19	Right-handed alpha
Helix 44	AE8	C	19	27	Right-handed alpha
Helix 45	AE9	C	27	36	Right-handed alpha
Helix 46	AF1	C	45	59	Right-handed alpha
Helix 47	AF2	C	90	103	Right-handed alpha
Helix 48	AF3	C	114	118	Right-handed 310
Helix 49	AF4	C	119	124	Right-handed alpha
Helix 50	AF5	C	135	149	Right-handed alpha
Helix 51	AF6	C	215	221	Right-handed alpha
Helix 52	AF7	C	226	233	Right-handed alpha
Helix 53	AF8	C	234	237	Right-handed 310
Helix 54	AF9	C	238	254	Right-handed alpha
Helix 55	AG1	C	258	260	Right-handed 310
Helix 56	AG2	C	261	279	Right-handed alpha
Helix 57	AG3	C	283	287	Right-handed 310
Helix 58	AG4	C	288	295	Right-handed 310
Helix 59	AG5	C	299	320	Right-handed alpha
Helix 60	AG6	D	8	18	Right-handed alpha
Helix 61	AG7	D	26	40	Right-handed alpha
Helix 62	AG8	D	64	68	Right-handed 310
Helix 63	AG9	D	71	84	Right-handed alpha
Helix 64	AH1	D	102	108	Right-handed alpha
Helix 65	AH2	D	118	133	Right-handed alpha
Helix 66	AH3	D	171	177	Right-handed alpha
Helix 67	AH4	D	181	198	Right-handed alpha
Helix 68	AH5	D	201	205	Right-handed 310
Helix 69	AH6	D	212	216	Right-handed 310
Helix 70	AH7	D	218	224	Right-handed alpha
Helix 71	AH8	D	244	248	Right-handed 310
Helix 72	AH9	D	250	260	Right-handed alpha
Helix 73	AI1	D	260	268	Right-handed alpha
Helix 74	AI2	D	269	274	Right-handed 310
Helix 75	AI3	D	283	288	Right-handed alpha
Helix 76	AI4	D	307	311	Right-handed 310
Helix 77	AI5	D	314	335	Right-handed alpha
Helix 78	AI6	D	348	366	Right-handed alpha
Helix 79	AI7	D	372	381	Right-handed alpha
Helix 80	AI8	D	387	406	Right-handed alpha
Helix 81	AI9	D	460	468	Right-handed alpha
Helix 82	AJ1	D	494	498	Right-handed 310
Helix 83	AJ2	D	505	510	Right-handed 310

There are 6 sheets in PDB entry 9QN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	111	first strand
Strand 2	A	62	66	parallel
Strand 3	A	38	42	parallel
Strand 4	A	128	131	parallel
Strand 5	A	152	159	parallel
Strand 6	A	162	168	anti-parallel
Strand 7	A	328	332	anti-parallel
Strand 8	A	337	341	anti-parallel
Strand 9	B	427	433	anti-parallel
Strand 10	B	414	418	anti-parallel
Strand 11	B	145	151	anti-parallel
Strand 12	B	136	142	anti-parallel
Strand 13	B	111	114	parallel
Strand 14	B	19	23	parallel
Strand 15	B	43	48	parallel
Strand 16	B	88	93	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	207	212	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	479	482	anti-parallel
Strand 3	B	516	521	anti-parallel
Strand 4	B	526	534	anti-parallel
Strand 5	B	449	454	parallel
Strand 6	B	544	546	anti-parallel

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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	111	first strand
Strand 2	C	62	66	parallel
Strand 3	C	38	42	parallel
Strand 4	C	128	131	parallel
Strand 5	C	152	159	parallel
Strand 6	C	162	168	anti-parallel
Strand 7	C	328	332	anti-parallel
Strand 8	C	337	341	anti-parallel
Strand 9	D	427	433	anti-parallel
Strand 10	D	414	418	anti-parallel
Strand 11	D	145	151	anti-parallel
Strand 12	D	136	142	anti-parallel
Strand 13	D	111	114	parallel
Strand 14	D	20	23	parallel
Strand 15	D	43	48	parallel
Strand 16	D	88	93	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	176	first strand
Strand 2	C	207	212	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	479	482	anti-parallel
Strand 3	D	516	521	anti-parallel
Strand 4	D	526	534	anti-parallel
Strand 5	D	449	454	parallel
Strand 6	D	544	546	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QN5