Analysis of interatomic Contacts of Structural Units in PDB entry:
9QN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QN8 entry

There are 13 chains in PDB entry 9QN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 20	ASP 339
B	ARG 333	LEU 339
C	SER 19	ASP 339
D	LEU 332	PRO 347
E	SER 19	ASP 339
F	ASN 329	ASN 348
G	GLU 18	ASP 339
H	SER 331	PRO 347
I	SER 19	ASP 339
J	GLN 330	HIS 346
K	GLU 18	ASP 339
L	LEU 332	ARG 338
Z	T 1	T 21

There are 98 helices in PDB entry 9QN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	29	Right-handed 310
Helix 2	AA2	A	34	45	Right-handed alpha
Helix 3	AA3	A	48	55	Right-handed alpha
Helix 4	AA4	A	56	63	Right-handed alpha
Helix 5	AA5	A	67	82	Right-handed alpha
Helix 6	AA6	A	89	97	Right-handed alpha
Helix 7	AA7	A	106	114	Right-handed alpha
Helix 8	AA8	A	132	144	Right-handed alpha
Helix 9	AA9	A	145	146	Right-handed 310
Helix 10	AB1	A	147	151	Right-handed 310
Helix 11	AB2	A	169	178	Right-handed alpha
Helix 12	AB3	A	181	188	Right-handed alpha
Helix 13	AB4	A	196	212	Right-handed alpha
Helix 14	AB5	A	227	232	Right-handed alpha
Helix 15	AB6	A	237	260	Right-handed alpha
Helix 16	AB7	A	288	296	Right-handed alpha
Helix 17	AB8	C	24	26	Right-handed 310
Helix 18	AB9	C	27	32	Right-handed alpha
Helix 19	AC1	C	36	45	Right-handed alpha
Helix 20	AC2	C	48	55	Right-handed alpha
Helix 21	AC3	C	56	63	Right-handed alpha
Helix 22	AC4	C	67	80	Right-handed alpha
Helix 23	AC5	C	89	98	Right-handed alpha
Helix 24	AC6	C	106	113	Right-handed alpha
Helix 25	AC7	C	132	144	Right-handed alpha
Helix 26	AC8	C	145	146	Right-handed 310
Helix 27	AC9	C	147	151	Right-handed 310
Helix 28	AD1	C	167	179	Right-handed alpha
Helix 29	AD2	C	181	188	Right-handed alpha
Helix 30	AD3	C	196	211	Right-handed alpha
Helix 31	AD4	C	225	232	Right-handed alpha
Helix 32	AD5	C	237	259	Right-handed alpha
Helix 33	AD6	C	288	296	Right-handed alpha
Helix 34	AD7	E	24	32	Right-handed 310
Helix 35	AD8	E	34	45	Right-handed alpha
Helix 36	AD9	E	48	54	Right-handed alpha
Helix 37	AE1	E	56	63	Right-handed alpha
Helix 38	AE2	E	67	80	Right-handed alpha
Helix 39	AE3	E	89	97	Right-handed alpha
Helix 40	AE4	E	106	114	Right-handed alpha
Helix 41	AE5	E	132	144	Right-handed alpha
Helix 42	AE6	E	145	146	Right-handed 310
Helix 43	AE7	E	147	151	Right-handed 310
Helix 44	AE8	E	167	178	Right-handed alpha
Helix 45	AE9	E	181	188	Right-handed alpha
Helix 46	AF1	E	196	214	Right-handed alpha
Helix 47	AF2	E	225	232	Right-handed alpha
Helix 48	AF3	E	237	260	Right-handed alpha
Helix 49	AF4	E	289	296	Right-handed alpha
Helix 50	AF5	G	24	29	Right-handed 310
Helix 51	AF6	G	34	45	Right-handed alpha
Helix 52	AF7	G	48	54	Right-handed alpha
Helix 53	AF8	G	56	63	Right-handed alpha
Helix 54	AF9	G	67	82	Right-handed alpha
Helix 55	AG1	G	89	98	Right-handed alpha
Helix 56	AG2	G	106	113	Right-handed alpha
Helix 57	AG3	G	132	144	Right-handed alpha
Helix 58	AG4	G	145	146	Right-handed 310
Helix 59	AG5	G	147	151	Right-handed 310
Helix 60	AG6	G	167	179	Right-handed alpha
Helix 61	AG7	G	181	188	Right-handed alpha
Helix 62	AG8	G	196	214	Right-handed alpha
Helix 63	AG9	G	225	232	Right-handed alpha
Helix 64	AH1	G	234	236	Right-handed 310
Helix 65	AH2	G	237	260	Right-handed alpha
Helix 66	AH3	G	289	296	Right-handed alpha
Helix 67	AH4	I	24	32	Right-handed 310
Helix 68	AH5	I	34	44	Right-handed alpha
Helix 69	AH6	I	48	55	Right-handed alpha
Helix 70	AH7	I	56	62	Right-handed alpha
Helix 71	AH8	I	67	82	Right-handed alpha
Helix 72	AH9	I	89	98	Right-handed alpha
Helix 73	AI1	I	106	114	Right-handed alpha
Helix 74	AI2	I	132	144	Right-handed alpha
Helix 75	AI3	I	167	179	Right-handed alpha
Helix 76	AI4	I	181	188	Right-handed alpha
Helix 77	AI5	I	196	212	Right-handed alpha
Helix 78	AI6	I	227	232	Right-handed alpha
Helix 79	AI7	I	237	260	Right-handed alpha
Helix 80	AI8	I	274	279	Right-handed 310
Helix 81	AI9	I	288	296	Right-handed alpha
Helix 82	AJ1	K	24	32	Right-handed 310
Helix 83	AJ2	K	34	45	Right-handed alpha
Helix 84	AJ3	K	48	54	Right-handed alpha
Helix 85	AJ4	K	56	63	Right-handed alpha
Helix 86	AJ5	K	69	82	Right-handed alpha
Helix 87	AJ6	K	88	98	Right-handed alpha
Helix 88	AJ7	K	106	114	Right-handed alpha
Helix 89	AJ8	K	132	144	Right-handed alpha
Helix 90	AJ9	K	145	146	Right-handed 310
Helix 91	AK1	K	147	151	Right-handed 310
Helix 92	AK2	K	167	179	Right-handed alpha
Helix 93	AK3	K	181	187	Right-handed alpha
Helix 94	AK4	K	196	211	Right-handed alpha
Helix 95	AK5	K	226	232	Right-handed alpha
Helix 96	AK6	K	234	236	Right-handed 310
Helix 97	AK7	K	237	259	Right-handed alpha
Helix 98	AK8	K	288	296	Right-handed alpha

There are 18 sheets in PDB entry 9QN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	156	161	parallel
Strand 4	C	216	222	parallel
Strand 5	C	262	267	parallel
Strand 6	C	122	127	parallel
Strand 7	C	298	304	parallel
Strand 8	C	309	316	anti-parallel
Strand 9	C	324	330	anti-parallel
Strand 10	C	333	335	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	117	118	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	156	161	parallel
Strand 3	A	216	220	parallel
Strand 4	A	262	267	parallel
Strand 5	A	122	127	parallel
Strand 6	A	298	304	parallel
Strand 7	A	309	316	anti-parallel
Strand 8	A	324	330	anti-parallel
Strand 9	A	333	335	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	285	286	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	156	161	parallel
Strand 4	E	216	222	parallel
Strand 5	E	262	267	parallel
Strand 6	E	122	127	parallel
Strand 7	E	298	304	parallel
Strand 8	E	309	316	anti-parallel
Strand 9	E	324	330	anti-parallel
Strand 10	E	333	335	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	117	118	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	271	first strand
Strand 2	C	284	286	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	156	161	parallel
Strand 4	G	216	222	parallel
Strand 5	G	262	267	parallel
Strand 6	G	122	127	parallel
Strand 7	G	298	304	parallel
Strand 8	G	309	316	anti-parallel
Strand 9	G	324	330	anti-parallel
Strand 10	G	333	335	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	117	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	271	first strand
Strand 2	E	284	286	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	I	189	193	anti-parallel
Strand 3	I	156	161	parallel
Strand 4	I	216	222	parallel
Strand 5	I	262	266	parallel
Strand 6	I	122	127	parallel
Strand 7	I	298	304	parallel
Strand 8	I	309	316	anti-parallel
Strand 9	I	327	330	anti-parallel
Strand 10	I	333	336	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	117	118	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	G	284	286	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	87	88	first strand
Strand 2	K	189	193	anti-parallel
Strand 3	K	157	161	parallel
Strand 4	K	218	222	parallel
Strand 5	K	262	267	parallel
Strand 6	K	122	127	parallel
Strand 7	K	298	304	parallel
Strand 8	K	309	316	anti-parallel
Strand 9	K	324	330	anti-parallel
Strand 10	K	333	335	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	102	first strand
Strand 2	I	117	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	269	271	first strand
Strand 2	I	284	286	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	101	102	first strand
Strand 2	K	117	118	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	269	271	first strand
Strand 2	K	284	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QN8