Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QO0 entry

There are 15 chains in PDB entry 9QO0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 3	GLN 403
G	ASN 10	THR 223
K	MET 1	GLY 76
N	ILE 6	PRO 72
P	LYS 37	GLN 57
A	ASN 34	PRO 469
B	GLN 35	ALA 443
C	ASP 50	MET 408
E	SER 24	ILE 333
F	SER 29	ASP 314
H	PHE 11	ASN 209
I	ASP 18	ALA 776
J	PHE 22	HIS 108
L	SER 3	CYS 160
M	SER 96	LEU 416

There are177 helices in PDB entry 9QO0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	4	15	Right-handed alpha
Helix 2	AA2	D	21	36	Right-handed alpha
Helix 3	AA3	D	40	53	Right-handed alpha
Helix 4	AA4	D	62	72	Right-handed alpha
Helix 5	AA5	D	77	92	Right-handed alpha
Helix 6	AA6	D	93	96	Right-handed 310
Helix 7	AA7	D	100	105	Right-handed alpha
Helix 8	AA8	D	109	117	Right-handed alpha
Helix 9	AA9	D	140	157	Right-handed alpha
Helix 10	AB1	D	160	175	Right-handed alpha
Helix 11	AB2	D	180	198	Right-handed alpha
Helix 12	AB3	D	200	212	Right-handed alpha
Helix 13	AB4	D	218	235	Right-handed alpha
Helix 14	AB5	D	240	252	Right-handed alpha
Helix 15	AB6	D	253	257	Right-handed 310
Helix 16	AB7	D	260	269	Right-handed alpha
Helix 17	AB8	D	274	277	Right-handed 310
Helix 18	AB9	D	278	285	Right-handed alpha
Helix 19	AC1	D	286	291	Right-handed 310
Helix 20	AC2	D	298	313	Right-handed alpha
Helix 21	AC3	D	321	328	Right-handed alpha
Helix 22	AC4	D	331	346	Right-handed alpha
Helix 23	AC5	D	365	392	Right-handed alpha
Helix 24	AC6	D	392	403	Right-handed alpha
Helix 25	AC7	G	11	17	Right-handed alpha
Helix 26	AC8	G	23	35	Right-handed alpha
Helix 27	AC9	G	44	49	Right-handed alpha
Helix 28	AD1	G	49	54	Right-handed alpha
Helix 29	AD2	G	55	57	Right-handed 310
Helix 30	AD3	G	60	73	Right-handed alpha
Helix 31	AD4	G	74	81	Right-handed alpha
Helix 32	AD5	G	89	108	Right-handed alpha
Helix 33	AD6	G	113	121	Right-handed alpha
Helix 34	AD7	G	124	138	Right-handed alpha
Helix 35	AD8	G	163	223	Right-handed alpha
Helix 36	AD9	K	22	35	Right-handed alpha
Helix 37	AE1	K	37	39	Right-handed 310
Helix 38	AE2	K	55	60	Right-handed alpha
Helix 39	AE3	N	39	46	Right-handed alpha
Helix 40	AE4	A	43	48	Right-handed alpha
Helix 41	AE5	A	54	67	Right-handed alpha
Helix 42	AE6	A	70	83	Right-handed alpha
Helix 43	AE7	A	87	106	Right-handed alpha
Helix 44	AE8	A	127	155	Right-handed alpha
Helix 45	AE9	A	157	175	Right-handed alpha
Helix 46	AF1	A	180	187	Right-handed alpha
Helix 47	AF2	A	196	213	Right-handed alpha
Helix 48	AF3	A	214	226	Right-handed alpha
Helix 49	AF4	A	242	260	Right-handed alpha
Helix 50	AF5	A	267	272	Right-handed alpha
Helix 51	AF6	A	284	289	Right-handed alpha
Helix 52	AF7	A	290	301	Right-handed alpha
Helix 53	AF8	A	302	310	Right-handed alpha
Helix 54	AF9	A	313	321	Right-handed alpha
Helix 55	AG1	A	323	334	Right-handed alpha
Helix 56	AG2	A	337	355	Right-handed alpha
Helix 57	AG3	A	358	360	Right-handed 310
Helix 58	AG4	A	361	379	Right-handed alpha
Helix 59	AG5	A	386	393	Right-handed alpha
Helix 60	AG6	A	396	410	Right-handed alpha
Helix 61	AG7	A	430	462	Right-handed alpha
Helix 62	AG8	B	36	43	Right-handed alpha
Helix 63	AG9	B	51	61	Right-handed alpha
Helix 64	AH1	B	65	82	Right-handed alpha
Helix 65	AH2	B	84	93	Right-handed alpha
Helix 66	AH3	B	94	100	Right-handed 310
Helix 67	AH4	B	104	118	Right-handed alpha
Helix 68	AH5	B	127	140	Right-handed alpha
Helix 69	AH6	B	144	162	Right-handed alpha
Helix 70	AH7	B	165	172	Right-handed alpha
Helix 71	AH8	B	175	180	Right-handed alpha
Helix 72	AH9	B	193	209	Right-handed alpha
Helix 73	AI1	B	210	221	Right-handed alpha
Helix 74	AI2	B	230	249	Right-handed alpha
Helix 75	AI3	B	252	269	Right-handed alpha
Helix 76	AI4	B	272	287	Right-handed alpha
Helix 77	AI5	B	292	296	Right-handed 310
Helix 78	AI6	B	308	321	Right-handed alpha
Helix 79	AI7	B	322	333	Right-handed alpha
Helix 80	AI8	B	346	364	Right-handed alpha
Helix 81	AI9	B	371	379	Right-handed alpha
Helix 82	AJ1	B	381	395	Right-handed alpha
Helix 83	AJ2	B	418	440	Right-handed alpha
Helix 84	AJ3	C	52	65	Right-handed alpha
Helix 85	AJ4	C	73	88	Right-handed alpha
Helix 86	AJ5	C	90	96	Right-handed 310
Helix 87	AJ6	C	98	114	Right-handed alpha
Helix 88	AJ7	C	120	132	Right-handed alpha
Helix 89	AJ8	C	139	153	Right-handed alpha
Helix 90	AJ9	C	158	163	Right-handed alpha
Helix 91	AK1	C	177	195	Right-handed alpha
Helix 92	AK2	C	197	210	Right-handed alpha
Helix 93	AK3	C	217	235	Right-handed alpha
Helix 94	AK4	C	252	257	Right-handed alpha
Helix 95	AK5	C	257	269	Right-handed alpha
Helix 96	AK6	C	271	282	Right-handed alpha
Helix 97	AK7	C	282	289	Right-handed alpha
Helix 98	AK8	C	293	312	Right-handed alpha
Helix 99	AK9	C	319	327	Right-handed alpha
Helix 100	AL1	C	330	344	Right-handed alpha
Helix 101	AL2	C	371	399	Right-handed alpha
Helix 102	AL3	C	400	408	Right-handed alpha
Helix 103	AL4	E	32	43	Right-handed alpha
Helix 104	AL5	E	59	72	Right-handed alpha
Helix 105	AL6	E	110	127	Right-handed alpha
Helix 106	AL7	E	148	161	Right-handed alpha
Helix 107	AL8	E	171	179	Right-handed alpha
Helix 108	AL9	E	210	217	Right-handed alpha
Helix 109	AM1	E	231	242	Right-handed alpha
Helix 110	AM2	E	245	250	Right-handed alpha
Helix 111	AM3	E	258	280	Right-handed alpha
Helix 112	AM4	E	299	329	Right-handed alpha
Helix 113	AM5	F	44	62	Right-handed alpha
Helix 114	AM6	F	102	114	Right-handed alpha
Helix 115	AM7	F	134	144	Right-handed alpha
Helix 116	AM8	F	193	207	Right-handed alpha
Helix 117	AM9	F	215	248	Right-handed alpha
Helix 118	AN1	F	254	266	Right-handed alpha
Helix 119	AN2	F	272	313	Right-handed alpha
Helix 120	AN3	H	12	27	Right-handed alpha
Helix 121	AN4	H	28	31	Right-handed 310
Helix 122	AN5	H	33	48	Right-handed alpha
Helix 123	AN6	H	49	60	Right-handed alpha
Helix 124	AN7	H	61	68	Right-handed alpha
Helix 125	AN8	H	69	84	Right-handed alpha
Helix 126	AN9	H	85	94	Right-handed alpha
Helix 127	AO1	H	102	124	Right-handed alpha
Helix 128	AO2	H	130	137	Right-handed alpha
Helix 129	AO3	H	140	147	Right-handed alpha
Helix 130	AO4	H	148	152	Right-handed 310
Helix 131	AO5	H	196	209	Right-handed alpha
Helix 132	AO6	I	20	33	Right-handed alpha
Helix 133	AO7	I	47	55	Right-handed alpha
Helix 134	AO8	I	88	106	Right-handed alpha
Helix 135	AO9	I	116	137	Right-handed alpha
Helix 136	AP1	I	137	143	Right-handed alpha
Helix 137	AP2	I	143	149	Right-handed alpha
Helix 138	AP3	I	158	171	Right-handed alpha
Helix 139	AP4	I	171	189	Right-handed alpha
Helix 140	AP5	I	199	211	Right-handed alpha
Helix 141	AP6	I	228	250	Right-handed alpha
Helix 142	AP7	I	260	279	Right-handed alpha
Helix 143	AP8	I	285	313	Right-handed alpha
Helix 144	AP9	I	316	327	Right-handed alpha
Helix 145	AQ1	I	330	356	Right-handed alpha
Helix 146	AQ2	I	363	384	Right-handed alpha
Helix 147	AQ3	I	388	405	Right-handed alpha
Helix 148	AQ4	I	406	412	Right-handed alpha
Helix 149	AQ5	I	417	430	Right-handed alpha
Helix 150	AQ6	I	438	455	Right-handed alpha
Helix 151	AQ7	I	458	477	Right-handed alpha
Helix 152	AQ8	I	481	496	Right-handed alpha
Helix 153	AQ9	I	497	502	Right-handed alpha
Helix 154	AR1	I	504	528	Right-handed alpha
Helix 155	AR2	I	556	574	Right-handed alpha
Helix 156	AR3	I	611	615	Right-handed 310
Helix 157	AR4	I	622	629	Right-handed alpha
Helix 158	AR5	I	632	646	Right-handed alpha
Helix 159	AR6	I	705	723	Right-handed alpha
Helix 160	AR7	I	727	738	Right-handed alpha
Helix 161	AR8	I	745	759	Right-handed alpha
Helix 162	AR9	J	53	57	Right-handed 310
Helix 163	AS1	J	81	89	Right-handed alpha
Helix 164	AS2	L	18	22	Right-handed 310
Helix 165	AS3	L	24	34	Right-handed alpha
Helix 166	AS4	L	57	65	Right-handed alpha
Helix 167	AS5	L	87	93	Right-handed alpha
Helix 168	AS6	L	96	111	Right-handed alpha
Helix 169	AS7	L	112	125	Right-handed alpha
Helix 170	AS8	L	150	160	Right-handed alpha
Helix 171	AS9	M	101	109	Right-handed alpha
Helix 172	AT1	M	113	122	Right-handed alpha
Helix 173	AT2	M	124	133	Right-handed alpha
Helix 174	AT3	M	148	158	Right-handed alpha
Helix 175	AT4	M	194	201	Right-handed alpha
Helix 176	AT5	M	219	228	Right-handed alpha
Helix 177	AT6	M	250	255	Right-handed alpha

There are 18 sheets in PDB entry 9QO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	358	360	anti-parallel
Strand 3	D	351	353	anti-parallel
Strand 4	B	366	370	parallel
Strand 5	B	408	411	anti-parallel
Strand 6	B	400	403	anti-parallel
Strand 7	A	381	385	parallel
Strand 8	A	423	426	anti-parallel
Strand 9	A	415	418	anti-parallel
Strand 10	C	314	318	parallel
Strand 11	C	357	360	anti-parallel
Strand 12	C	349	352	anti-parallel
Strand 13	H	125	129	parallel
Strand 14	H	161	163	anti-parallel
Strand 15	H	154	156	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	154	anti-parallel
Strand 3	G	143	146	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	2	7	anti-parallel
Strand 3	K	66	71	parallel
Strand 4	K	41	44	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	13	first strand
Strand 2	N	18	23	anti-parallel
Strand 3	N	66	71	anti-parallel
Strand 4	N	55	59	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	185	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	168	169	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	92	first strand
Strand 2	E	54	58	parallel
Strand 3	E	225	229	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	E	78	81	anti-parallel
Strand 3	E	135	139	anti-parallel
Strand 4	E	166	170	parallel
Strand 5	E	183	188	anti-parallel
Strand 6	E	221	223	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	185	first strand
Strand 2	F	165	170	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	120	127	parallel
Strand 5	F	70	75	anti-parallel
Strand 6	F	81	88	anti-parallel
Strand 7	F	41	43	parallel
Strand 8	F	188	190	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	98	100	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	536	541	first strand
Strand 2	J	23	35	parallel
Strand 3	I	577	591	anti-parallel
Strand 4	I	600	604	anti-parallel
Strand 5	I	680	681	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	619	621	first strand
Strand 2	I	668	671	anti-parallel
Strand 3	I	649	650	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	725	726	first strand
Strand 2	I	771	774	anti-parallel
Strand 3	I	762	764	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	78	80	first strand
Strand 2	J	70	73	anti-parallel
Strand 3	J	103	106	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	13	16	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	139	140	first strand
Strand 2	M	162	163	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	185	187	first strand
Strand 2	M	210	214	parallel
Strand 3	M	234	238	parallel
Strand 4	M	260	262	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	314	316	first strand
Strand 2	M	339	341	parallel
Strand 3	M	364	366	parallel
Strand 4	M	387	388	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QO0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO0