Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QO1 entry

There are 12 chains in PDB entry 9QO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 34	PRO 470
B	GLN 35	ALA 443
C	GLN 52	SER 407
D	ALA 23	GLN 403
E	SER 24	ILE 333
F	PRO 28	ASP 314
G	ASN 10	THR 223
H	SER 12	ASN 209
I	LEU 225	ALA 776
J	PHE 22	HIS 108
P	LYS 37	GLN 57
K	MET 1	GLY 76

There are152 helices in PDB entry 9QO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed alpha
Helix 2	AA2	A	54	65	Right-handed alpha
Helix 3	AA3	A	67	69	Right-handed 310
Helix 4	AA4	A	70	80	Right-handed alpha
Helix 5	AA5	A	87	106	Right-handed alpha
Helix 6	AA6	A	128	155	Right-handed alpha
Helix 7	AA7	A	157	175	Right-handed alpha
Helix 8	AA8	A	178	186	Right-handed alpha
Helix 9	AA9	A	192	196	Right-handed 310
Helix 10	AB1	A	197	213	Right-handed alpha
Helix 11	AB2	A	215	225	Right-handed alpha
Helix 12	AB3	A	245	260	Right-handed alpha
Helix 13	AB4	A	262	271	Right-handed alpha
Helix 14	AB5	A	284	289	Right-handed alpha
Helix 15	AB6	A	290	298	Right-handed alpha
Helix 16	AB7	A	302	310	Right-handed alpha
Helix 17	AB8	A	313	322	Right-handed alpha
Helix 18	AB9	A	323	335	Right-handed alpha
Helix 19	AC1	A	337	348	Right-handed alpha
Helix 20	AC2	A	348	353	Right-handed alpha
Helix 21	AC3	A	358	361	Right-handed 310
Helix 22	AC4	A	362	379	Right-handed alpha
Helix 23	AC5	A	386	392	Right-handed alpha
Helix 24	AC6	A	396	410	Right-handed alpha
Helix 25	AC7	A	430	457	Right-handed alpha
Helix 26	AC8	B	36	42	Right-handed alpha
Helix 27	AC9	B	51	61	Right-handed alpha
Helix 28	AD1	B	65	82	Right-handed alpha
Helix 29	AD2	B	84	94	Right-handed alpha
Helix 30	AD3	B	95	100	Right-handed 310
Helix 31	AD4	B	104	119	Right-handed alpha
Helix 32	AD5	B	126	140	Right-handed alpha
Helix 33	AD6	B	146	162	Right-handed alpha
Helix 34	AD7	B	165	172	Right-handed alpha
Helix 35	AD8	B	175	181	Right-handed alpha
Helix 36	AD9	B	193	208	Right-handed alpha
Helix 37	AE1	B	213	221	Right-handed alpha
Helix 38	AE2	B	230	249	Right-handed alpha
Helix 39	AE3	B	252	269	Right-handed alpha
Helix 40	AE4	B	272	287	Right-handed alpha
Helix 41	AE5	B	308	321	Right-handed alpha
Helix 42	AE6	B	324	333	Right-handed alpha
Helix 43	AE7	B	347	363	Right-handed alpha
Helix 44	AE8	B	371	379	Right-handed alpha
Helix 45	AE9	B	381	395	Right-handed alpha
Helix 46	AF1	B	418	440	Right-handed alpha
Helix 47	AF2	C	53	65	Right-handed alpha
Helix 48	AF3	C	73	89	Right-handed alpha
Helix 49	AF4	C	92	97	Right-handed alpha
Helix 50	AF5	C	98	115	Right-handed alpha
Helix 51	AF6	C	116	118	Right-handed 310
Helix 52	AF7	C	119	130	Right-handed alpha
Helix 53	AF8	C	141	153	Right-handed alpha
Helix 54	AF9	C	155	162	Right-handed 310
Helix 55	AG1	C	177	195	Right-handed alpha
Helix 56	AG2	C	197	210	Right-handed alpha
Helix 57	AG3	C	217	235	Right-handed alpha
Helix 58	AG4	C	252	257	Right-handed alpha
Helix 59	AG5	C	257	269	Right-handed alpha
Helix 60	AG6	C	271	282	Right-handed alpha
Helix 61	AG7	C	282	289	Right-handed alpha
Helix 62	AG8	C	293	311	Right-handed alpha
Helix 63	AG9	C	319	327	Right-handed alpha
Helix 64	AH1	C	329	345	Right-handed alpha
Helix 65	AH2	C	371	399	Right-handed alpha
Helix 66	AH3	C	400	407	Right-handed alpha
Helix 67	AH4	D	24	36	Right-handed alpha
Helix 68	AH5	D	38	52	Right-handed alpha
Helix 69	AH6	D	64	73	Right-handed alpha
Helix 70	AH7	D	74	76	Right-handed 310
Helix 71	AH8	D	80	93	Right-handed alpha
Helix 72	AH9	D	94	99	Right-handed 310
Helix 73	AI1	D	100	117	Right-handed alpha
Helix 74	AI2	D	120	129	Right-handed alpha
Helix 75	AI3	D	140	157	Right-handed alpha
Helix 76	AI4	D	160	175	Right-handed alpha
Helix 77	AI5	D	180	198	Right-handed alpha
Helix 78	AI6	D	200	212	Right-handed alpha
Helix 79	AI7	D	219	236	Right-handed alpha
Helix 80	AI8	D	240	252	Right-handed alpha
Helix 81	AI9	D	253	257	Right-handed 310
Helix 82	AJ1	D	260	269	Right-handed alpha
Helix 83	AJ2	D	279	283	Right-handed 310
Helix 84	AJ3	D	286	291	Right-handed 310
Helix 85	AJ4	D	298	313	Right-handed alpha
Helix 86	AJ5	D	321	328	Right-handed alpha
Helix 87	AJ6	D	331	345	Right-handed alpha
Helix 88	AJ7	D	365	390	Right-handed alpha
Helix 89	AJ8	D	392	401	Right-handed alpha
Helix 90	AJ9	E	32	43	Right-handed alpha
Helix 91	AK1	E	59	70	Right-handed alpha
Helix 92	AK2	E	110	125	Right-handed alpha
Helix 93	AK3	E	148	162	Right-handed alpha
Helix 94	AK4	E	171	179	Right-handed alpha
Helix 95	AK5	E	211	215	Right-handed 310
Helix 96	AK6	E	231	241	Right-handed alpha
Helix 97	AK7	E	258	283	Right-handed alpha
Helix 98	AK8	E	299	329	Right-handed alpha
Helix 99	AK9	F	44	62	Right-handed alpha
Helix 100	AL1	F	101	113	Right-handed alpha
Helix 101	AL2	F	132	143	Right-handed alpha
Helix 102	AL3	F	193	204	Right-handed alpha
Helix 103	AL4	F	218	248	Right-handed alpha
Helix 104	AL5	F	253	266	Right-handed alpha
Helix 105	AL6	F	272	312	Right-handed alpha
Helix 106	AL7	G	11	19	Right-handed alpha
Helix 107	AL8	G	26	36	Right-handed alpha
Helix 108	AL9	G	49	54	Right-handed alpha
Helix 109	AM1	G	55	57	Right-handed 310
Helix 110	AM2	G	61	73	Right-handed alpha
Helix 111	AM3	G	74	81	Right-handed alpha
Helix 112	AM4	G	89	108	Right-handed alpha
Helix 113	AM5	G	113	120	Right-handed alpha
Helix 114	AM6	G	124	138	Right-handed alpha
Helix 115	AM7	G	166	222	Right-handed alpha
Helix 116	AM8	H	13	27	Right-handed alpha
Helix 117	AM9	H	33	48	Right-handed alpha
Helix 118	AN1	H	50	60	Right-handed alpha
Helix 119	AN2	H	61	68	Right-handed alpha
Helix 120	AN3	H	69	83	Right-handed alpha
Helix 121	AN4	H	85	94	Right-handed alpha
Helix 122	AN5	H	102	124	Right-handed alpha
Helix 123	AN6	H	130	137	Right-handed alpha
Helix 124	AN7	H	140	147	Right-handed alpha
Helix 125	AN8	H	148	152	Right-handed 310
Helix 126	AN9	H	196	209	Right-handed alpha
Helix 127	AO1	I	226	251	Right-handed alpha
Helix 128	AO2	I	260	279	Right-handed alpha
Helix 129	AO3	I	283	309	Right-handed alpha
Helix 130	AO4	I	309	315	Right-handed alpha
Helix 131	AO5	I	317	327	Right-handed alpha
Helix 132	AO6	I	330	353	Right-handed alpha
Helix 133	AO7	I	363	385	Right-handed alpha
Helix 134	AO8	I	388	411	Right-handed alpha
Helix 135	AO9	I	417	429	Right-handed alpha
Helix 136	AP1	I	438	454	Right-handed alpha
Helix 137	AP2	I	458	476	Right-handed alpha
Helix 138	AP3	I	481	496	Right-handed alpha
Helix 139	AP4	I	497	502	Right-handed alpha
Helix 140	AP5	I	504	526	Right-handed alpha
Helix 141	AP6	I	556	558	Right-handed 310
Helix 142	AP7	I	559	574	Right-handed alpha
Helix 143	AP8	I	611	616	Right-handed 310
Helix 144	AP9	I	621	630	Right-handed alpha
Helix 145	AQ1	I	632	646	Right-handed alpha
Helix 146	AQ2	I	705	722	Right-handed alpha
Helix 147	AQ3	I	727	736	Right-handed alpha
Helix 148	AQ4	I	745	759	Right-handed alpha
Helix 149	AQ5	J	53	59	Right-handed alpha
Helix 150	AQ6	J	81	88	Right-handed alpha
Helix 151	AQ7	K	22	35	Right-handed alpha
Helix 152	AQ8	K	55	60	Right-handed alpha

There are 10 sheets in PDB entry 9QO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	358	360	anti-parallel
Strand 3	D	351	353	anti-parallel
Strand 4	B	366	370	parallel
Strand 5	B	408	411	anti-parallel
Strand 6	B	400	403	anti-parallel
Strand 7	A	381	385	parallel
Strand 8	A	423	426	anti-parallel
Strand 9	A	415	418	anti-parallel
Strand 10	C	314	318	parallel
Strand 11	C	357	360	anti-parallel
Strand 12	C	349	352	anti-parallel
Strand 13	H	125	129	parallel
Strand 14	H	161	163	anti-parallel
Strand 15	H	154	156	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	90	97	parallel
Strand 3	E	78	85	anti-parallel
Strand 4	E	136	139	anti-parallel
Strand 5	E	167	170	parallel
Strand 6	E	183	188	anti-parallel
Strand 7	E	221	229	anti-parallel
Strand 8	E	54	58	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	186	first strand
Strand 2	F	165	168	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	123	127	parallel
Strand 5	F	70	75	anti-parallel
Strand 6	F	81	88	anti-parallel
Strand 7	F	41	43	parallel
Strand 8	F	189	190	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	535	541	first strand
Strand 2	J	24	35	parallel
Strand 3	I	577	590	anti-parallel
Strand 4	I	600	602	anti-parallel
Strand 5	I	679	681	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	619	620	first strand
Strand 2	I	669	671	anti-parallel
Strand 3	I	649	650	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	725	726	first strand
Strand 2	I	771	774	anti-parallel
Strand 3	I	762	764	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	71	first strand
Strand 2	J	79	80	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	16	first strand
Strand 2	K	2	7	anti-parallel
Strand 3	K	66	69	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	45	first strand
Strand 2	K	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO1