Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QO3 entry

There are 13 chains in PDB entry 9QO3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 34	PRO 469
C	ALA 4	MET 408
D	ALA 39	ALA 405
E	SER 24	ILE 333
F	PRO 28	GLN 316
G	ASN 10	SER 225
H	PHE 11	ASN 209
I	ASP 18	ASN 685
L	ILE 4	CYS 160
M	SER 96	GLN 419
N	LYS 4	PRO 74
B	GLN 35	ALA 443
P	LYS 37	GLN 57

There are177 helices in PDB entry 9QO3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed alpha
Helix 2	AA2	A	53	66	Right-handed alpha
Helix 3	AA3	A	70	83	Right-handed alpha
Helix 4	AA4	A	87	105	Right-handed alpha
Helix 5	AA5	A	128	156	Right-handed alpha
Helix 6	AA6	A	157	176	Right-handed alpha
Helix 7	AA7	A	177	187	Right-handed alpha
Helix 8	AA8	A	194	213	Right-handed alpha
Helix 9	AA9	A	214	228	Right-handed alpha
Helix 10	AB1	A	240	260	Right-handed alpha
Helix 11	AB2	A	263	271	Right-handed alpha
Helix 12	AB3	A	284	301	Right-handed alpha
Helix 13	AB4	A	302	310	Right-handed alpha
Helix 14	AB5	A	313	322	Right-handed alpha
Helix 15	AB6	A	323	335	Right-handed alpha
Helix 16	AB7	A	337	353	Right-handed alpha
Helix 17	AB8	A	358	360	Right-handed 310
Helix 18	AB9	A	361	379	Right-handed alpha
Helix 19	AC1	A	386	393	Right-handed alpha
Helix 20	AC2	A	396	411	Right-handed alpha
Helix 21	AC3	A	430	463	Right-handed alpha
Helix 22	AC4	C	5	16	Right-handed alpha
Helix 23	AC5	C	20	31	Right-handed alpha
Helix 24	AC6	C	32	37	Right-handed alpha
Helix 25	AC7	C	56	66	Right-handed alpha
Helix 26	AC8	C	73	87	Right-handed alpha
Helix 27	AC9	C	89	95	Right-handed alpha
Helix 28	AD1	C	98	115	Right-handed alpha
Helix 29	AD2	C	120	130	Right-handed alpha
Helix 30	AD3	C	140	152	Right-handed alpha
Helix 31	AD4	C	158	162	Right-handed 310
Helix 32	AD5	C	171	175	Right-handed 310
Helix 33	AD6	C	177	195	Right-handed alpha
Helix 34	AD7	C	197	210	Right-handed alpha
Helix 35	AD8	C	217	236	Right-handed alpha
Helix 36	AD9	C	246	252	Right-handed alpha
Helix 37	AE1	C	252	257	Right-handed alpha
Helix 38	AE2	C	257	269	Right-handed alpha
Helix 39	AE3	C	271	282	Right-handed alpha
Helix 40	AE4	C	282	289	Right-handed alpha
Helix 41	AE5	C	293	311	Right-handed alpha
Helix 42	AE6	C	319	326	Right-handed alpha
Helix 43	AE7	C	330	345	Right-handed alpha
Helix 44	AE8	C	369	398	Right-handed alpha
Helix 45	AE9	C	400	408	Right-handed alpha
Helix 46	AF1	D	40	54	Right-handed alpha
Helix 47	AF2	D	61	73	Right-handed alpha
Helix 48	AF3	D	77	90	Right-handed alpha
Helix 49	AF4	D	100	117	Right-handed alpha
Helix 50	AF5	D	119	128	Right-handed alpha
Helix 51	AF6	D	143	159	Right-handed alpha
Helix 52	AF7	D	160	176	Right-handed alpha
Helix 53	AF8	D	180	198	Right-handed alpha
Helix 54	AF9	D	202	213	Right-handed alpha
Helix 55	AG1	D	218	236	Right-handed alpha
Helix 56	AG2	D	239	252	Right-handed alpha
Helix 57	AG3	D	254	259	Right-handed 310
Helix 58	AG4	D	260	270	Right-handed alpha
Helix 59	AG5	D	274	284	Right-handed alpha
Helix 60	AG6	D	287	291	Right-handed 310
Helix 61	AG7	D	298	315	Right-handed alpha
Helix 62	AG8	D	321	329	Right-handed alpha
Helix 63	AG9	D	331	345	Right-handed alpha
Helix 64	AH1	D	365	390	Right-handed alpha
Helix 65	AH2	D	392	405	Right-handed alpha
Helix 66	AH3	E	25	29	Right-handed 310
Helix 67	AH4	E	32	42	Right-handed alpha
Helix 68	AH5	E	43	49	Right-handed alpha
Helix 69	AH6	E	58	72	Right-handed alpha
Helix 70	AH7	E	108	125	Right-handed alpha
Helix 71	AH8	E	148	160	Right-handed alpha
Helix 72	AH9	E	171	179	Right-handed alpha
Helix 73	AI1	E	207	209	Right-handed 310
Helix 74	AI2	E	210	217	Right-handed alpha
Helix 75	AI3	E	231	242	Right-handed alpha
Helix 76	AI4	E	245	252	Right-handed alpha
Helix 77	AI5	E	258	281	Right-handed alpha
Helix 78	AI6	E	298	329	Right-handed alpha
Helix 79	AI7	F	44	62	Right-handed alpha
Helix 80	AI8	F	101	113	Right-handed alpha
Helix 81	AI9	F	132	144	Right-handed alpha
Helix 82	AJ1	F	193	205	Right-handed alpha
Helix 83	AJ2	F	215	248	Right-handed alpha
Helix 84	AJ3	F	253	267	Right-handed alpha
Helix 85	AJ4	F	272	313	Right-handed alpha
Helix 86	AJ5	G	11	19	Right-handed alpha
Helix 87	AJ6	G	25	37	Right-handed alpha
Helix 88	AJ7	G	43	48	Right-handed alpha
Helix 89	AJ8	G	49	54	Right-handed alpha
Helix 90	AJ9	G	55	57	Right-handed 310
Helix 91	AK1	G	58	59	Right-handed 310
Helix 92	AK2	G	60	73	Right-handed alpha
Helix 93	AK3	G	74	81	Right-handed alpha
Helix 94	AK4	G	89	108	Right-handed alpha
Helix 95	AK5	G	113	121	Right-handed alpha
Helix 96	AK6	G	124	138	Right-handed alpha
Helix 97	AK7	G	163	165	Right-handed 310
Helix 98	AK8	G	166	225	Right-handed alpha
Helix 99	AK9	H	12	26	Right-handed alpha
Helix 100	AL1	H	33	47	Right-handed alpha
Helix 101	AL2	H	49	60	Right-handed alpha
Helix 102	AL3	H	61	66	Right-handed alpha
Helix 103	AL4	H	69	84	Right-handed alpha
Helix 104	AL5	H	85	94	Right-handed alpha
Helix 105	AL6	H	102	124	Right-handed alpha
Helix 106	AL7	H	130	138	Right-handed alpha
Helix 107	AL8	H	140	151	Right-handed alpha
Helix 108	AL9	H	196	208	Right-handed alpha
Helix 109	AM1	I	20	33	Right-handed alpha
Helix 110	AM2	I	41	55	Right-handed alpha
Helix 111	AM3	I	88	106	Right-handed alpha
Helix 112	AM4	I	116	137	Right-handed alpha
Helix 113	AM5	I	158	189	Right-handed alpha
Helix 114	AM6	I	199	210	Right-handed alpha
Helix 115	AM7	I	228	249	Right-handed alpha
Helix 116	AM8	I	260	278	Right-handed alpha
Helix 117	AM9	I	283	313	Right-handed alpha
Helix 118	AN1	I	316	327	Right-handed alpha
Helix 119	AN2	I	330	356	Right-handed alpha
Helix 120	AN3	I	363	384	Right-handed alpha
Helix 121	AN4	I	388	405	Right-handed alpha
Helix 122	AN5	I	406	412	Right-handed alpha
Helix 123	AN6	I	417	430	Right-handed alpha
Helix 124	AN7	I	438	454	Right-handed alpha
Helix 125	AN8	I	458	477	Right-handed alpha
Helix 126	AN9	I	481	496	Right-handed alpha
Helix 127	AO1	I	497	502	Right-handed alpha
Helix 128	AO2	I	504	527	Right-handed alpha
Helix 129	AO3	I	556	574	Right-handed alpha
Helix 130	AO4	I	582	585	Right-handed 310
Helix 131	AO5	I	622	629	Right-handed alpha
Helix 132	AO6	I	632	646	Right-handed alpha
Helix 133	AO7	L	17	22	Right-handed alpha
Helix 134	AO8	L	24	33	Right-handed alpha
Helix 135	AO9	L	51	65	Right-handed alpha
Helix 136	AP1	L	89	93	Right-handed alpha
Helix 137	AP2	L	99	111	Right-handed alpha
Helix 138	AP3	L	114	128	Right-handed alpha
Helix 139	AP4	L	134	140	Right-handed alpha
Helix 140	AP5	L	149	157	Right-handed alpha
Helix 141	AP6	M	101	110	Right-handed alpha
Helix 142	AP7	M	113	122	Right-handed alpha
Helix 143	AP8	M	124	132	Right-handed alpha
Helix 144	AP9	M	148	158	Right-handed alpha
Helix 145	AQ1	M	194	202	Right-handed alpha
Helix 146	AQ2	M	219	227	Right-handed alpha
Helix 147	AQ3	M	244	255	Right-handed alpha
Helix 148	AQ4	M	270	281	Right-handed alpha
Helix 149	AQ5	M	298	309	Right-handed alpha
Helix 150	AQ6	M	325	331	Right-handed alpha
Helix 151	AQ7	M	332	334	Right-handed 310
Helix 152	AQ8	M	351	359	Right-handed 310
Helix 153	AQ9	M	375	383	Right-handed alpha
Helix 154	AR1	N	25	30	Right-handed alpha
Helix 155	AR2	N	39	47	Right-handed alpha
Helix 156	AR3	B	36	43	Right-handed alpha
Helix 157	AR4	B	50	61	Right-handed alpha
Helix 158	AR5	B	65	82	Right-handed alpha
Helix 159	AR6	B	84	96	Right-handed alpha
Helix 160	AR7	B	97	101	Right-handed 310
Helix 161	AR8	B	104	124	Right-handed alpha
Helix 162	AR9	B	125	129	Right-handed 310
Helix 163	AS1	B	145	162	Right-handed alpha
Helix 164	AS2	B	165	172	Right-handed alpha
Helix 165	AS3	B	175	180	Right-handed alpha
Helix 166	AS4	B	193	209	Right-handed alpha
Helix 167	AS5	B	211	222	Right-handed alpha
Helix 168	AS6	B	230	249	Right-handed alpha
Helix 169	AS7	B	252	269	Right-handed alpha
Helix 170	AS8	B	272	287	Right-handed alpha
Helix 171	AS9	B	296	304	Right-handed 310
Helix 172	AT1	B	308	321	Right-handed alpha
Helix 173	AT2	B	323	333	Right-handed alpha
Helix 174	AT3	B	346	364	Right-handed alpha
Helix 175	AT4	B	371	379	Right-handed alpha
Helix 176	AT5	B	381	395	Right-handed alpha
Helix 177	AT6	B	419	442	Right-handed alpha

There are 14 sheets in PDB entry 9QO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	423	426	anti-parallel
Strand 3	A	415	418	anti-parallel
Strand 4	C	314	318	parallel
Strand 5	C	357	360	anti-parallel
Strand 6	C	349	352	anti-parallel
Strand 7	H	125	129	parallel
Strand 8	H	161	163	anti-parallel
Strand 9	H	154	156	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel
Strand 4	D	316	320	parallel
Strand 5	D	358	361	anti-parallel
Strand 6	D	350	353	anti-parallel
Strand 7	B	366	370	parallel
Strand 8	B	408	410	anti-parallel
Strand 9	B	401	403	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	54	57	parallel
Strand 3	E	221	228	parallel
Strand 4	E	183	188	anti-parallel
Strand 5	E	166	170	anti-parallel
Strand 6	E	135	138	parallel
Strand 7	E	79	81	anti-parallel
Strand 8	E	95	97	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	42	first strand
Strand 2	F	80	88	parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	120	127	anti-parallel
Strand 5	F	150	154	parallel
Strand 6	F	165	174	anti-parallel
Strand 7	F	179	186	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	93	first strand
Strand 2	F	98	100	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	587	591	first strand
Strand 2	I	600	604	anti-parallel
Strand 3	I	679	681	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	619	621	first strand
Strand 2	I	668	671	anti-parallel
Strand 3	I	649	650	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	139	141	first strand
Strand 2	M	162	164	parallel
Strand 3	M	185	187	parallel
Strand 4	M	210	212	parallel
Strand 5	M	234	237	parallel
Strand 6	M	260	263	parallel
Strand 7	M	287	289	parallel
Strand 8	M	314	316	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	216	217	first strand
Strand 2	M	240	241	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	339	341	first strand
Strand 2	M	364	366	parallel
Strand 3	M	387	388	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	408	409	first strand
Strand 2	M	412	413	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	8	first strand
Strand 2	N	18	23	anti-parallel
Strand 3	N	12	13	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	8	first strand
Strand 2	N	18	23	anti-parallel
Strand 3	N	66	71	anti-parallel
Strand 4	N	55	56	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	185	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QO3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO3