Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QO4 entry

There are 14 chains in PDB entry 9QO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 34	PRO 469
B	ASN 34	ALA 443
C	ALA 4	MET 408
D	LEU 22	ALA 405
E	SER 24	ILE 333
F	PRO 28	GLN 316
G	ASN 10	SER 225
H	PHE 11	ASN 209
I	ILE 15	ASN 685
J	LYS 20	GLN 104
L	ILE 4	CYS 160
M	SER 96	GLN 419
N	LYS 4	PRO 74
P	ALA 38	GLN 57

There are189 helices in PDB entry 9QO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	48	Right-handed alpha
Helix 2	AA2	A	53	66	Right-handed alpha
Helix 3	AA3	A	70	82	Right-handed alpha
Helix 4	AA4	A	87	105	Right-handed alpha
Helix 5	AA5	A	128	148	Right-handed alpha
Helix 6	AA6	A	148	156	Right-handed alpha
Helix 7	AA7	A	157	176	Right-handed alpha
Helix 8	AA8	A	177	187	Right-handed alpha
Helix 9	AA9	A	194	213	Right-handed alpha
Helix 10	AB1	A	214	228	Right-handed alpha
Helix 11	AB2	A	240	260	Right-handed alpha
Helix 12	AB3	A	262	271	Right-handed alpha
Helix 13	AB4	A	285	298	Right-handed alpha
Helix 14	AB5	A	302	310	Right-handed alpha
Helix 15	AB6	A	316	322	Right-handed alpha
Helix 16	AB7	A	323	335	Right-handed alpha
Helix 17	AB8	A	337	353	Right-handed alpha
Helix 18	AB9	A	361	379	Right-handed alpha
Helix 19	AC1	A	386	393	Right-handed alpha
Helix 20	AC2	A	396	411	Right-handed alpha
Helix 21	AC3	A	430	462	Right-handed alpha
Helix 22	AC4	B	35	41	Right-handed alpha
Helix 23	AC5	B	46	60	Right-handed alpha
Helix 24	AC6	B	67	81	Right-handed alpha
Helix 25	AC7	B	84	98	Right-handed alpha
Helix 26	AC8	B	104	122	Right-handed alpha
Helix 27	AC9	B	124	140	Right-handed alpha
Helix 28	AD1	B	144	162	Right-handed alpha
Helix 29	AD2	B	167	180	Right-handed alpha
Helix 30	AD3	B	190	208	Right-handed alpha
Helix 31	AD4	B	211	220	Right-handed alpha
Helix 32	AD5	B	230	247	Right-handed alpha
Helix 33	AD6	B	250	269	Right-handed alpha
Helix 34	AD7	B	272	288	Right-handed alpha
Helix 35	AD8	B	299	303	Right-handed 310
Helix 36	AD9	B	305	320	Right-handed alpha
Helix 37	AE1	B	322	333	Right-handed alpha
Helix 38	AE2	B	342	345	Right-handed 310
Helix 39	AE3	B	346	363	Right-handed alpha
Helix 40	AE4	B	371	379	Right-handed alpha
Helix 41	AE5	B	381	395	Right-handed alpha
Helix 42	AE6	B	419	441	Right-handed alpha
Helix 43	AE7	C	5	16	Right-handed alpha
Helix 44	AE8	C	21	31	Right-handed alpha
Helix 45	AE9	C	56	66	Right-handed alpha
Helix 46	AF1	C	73	87	Right-handed alpha
Helix 47	AF2	C	89	94	Right-handed alpha
Helix 48	AF3	C	98	115	Right-handed alpha
Helix 49	AF4	C	120	131	Right-handed alpha
Helix 50	AF5	C	141	152	Right-handed alpha
Helix 51	AF6	C	158	162	Right-handed 310
Helix 52	AF7	C	171	175	Right-handed 310
Helix 53	AF8	C	177	195	Right-handed alpha
Helix 54	AF9	C	197	210	Right-handed alpha
Helix 55	AG1	C	217	236	Right-handed alpha
Helix 56	AG2	C	246	252	Right-handed alpha
Helix 57	AG3	C	252	257	Right-handed alpha
Helix 58	AG4	C	257	269	Right-handed alpha
Helix 59	AG5	C	271	282	Right-handed alpha
Helix 60	AG6	C	282	289	Right-handed alpha
Helix 61	AG7	C	294	310	Right-handed alpha
Helix 62	AG8	C	319	326	Right-handed alpha
Helix 63	AG9	C	330	344	Right-handed alpha
Helix 64	AH1	C	369	400	Right-handed alpha
Helix 65	AH2	C	400	408	Right-handed alpha
Helix 66	AH3	D	23	36	Right-handed alpha
Helix 67	AH4	D	38	50	Right-handed alpha
Helix 68	AH5	D	51	53	Right-handed 310
Helix 69	AH6	D	61	73	Right-handed alpha
Helix 70	AH7	D	77	89	Right-handed alpha
Helix 71	AH8	D	100	117	Right-handed alpha
Helix 72	AH9	D	119	127	Right-handed alpha
Helix 73	AI1	D	128	130	Right-handed 310
Helix 74	AI2	D	140	157	Right-handed alpha
Helix 75	AI3	D	158	159	Right-handed 310
Helix 76	AI4	D	160	163	Right-handed 310
Helix 77	AI5	D	164	176	Right-handed alpha
Helix 78	AI6	D	180	198	Right-handed alpha
Helix 79	AI7	D	202	212	Right-handed alpha
Helix 80	AI8	D	218	236	Right-handed alpha
Helix 81	AI9	D	240	252	Right-handed alpha
Helix 82	AJ1	D	253	258	Right-handed 310
Helix 83	AJ2	D	260	269	Right-handed alpha
Helix 84	AJ3	D	274	283	Right-handed alpha
Helix 85	AJ4	D	284	285	Right-handed 310
Helix 86	AJ5	D	286	290	Right-handed 310
Helix 87	AJ6	D	298	313	Right-handed alpha
Helix 88	AJ7	D	321	329	Right-handed alpha
Helix 89	AJ8	D	331	346	Right-handed alpha
Helix 90	AJ9	D	365	390	Right-handed alpha
Helix 91	AK1	D	392	405	Right-handed alpha
Helix 92	AK2	E	26	30	Right-handed 310
Helix 93	AK3	E	32	42	Right-handed alpha
Helix 94	AK4	E	44	49	Right-handed alpha
Helix 95	AK5	E	59	72	Right-handed alpha
Helix 96	AK6	E	108	125	Right-handed alpha
Helix 97	AK7	E	148	160	Right-handed alpha
Helix 98	AK8	E	171	179	Right-handed alpha
Helix 99	AK9	E	210	217	Right-handed alpha
Helix 100	AL1	E	231	240	Right-handed alpha
Helix 101	AL2	E	241	244	Right-handed 310
Helix 102	AL3	E	245	251	Right-handed alpha
Helix 103	AL4	E	258	281	Right-handed alpha
Helix 104	AL5	E	298	329	Right-handed alpha
Helix 105	AL6	F	44	62	Right-handed alpha
Helix 106	AL7	F	101	114	Right-handed alpha
Helix 107	AL8	F	132	143	Right-handed alpha
Helix 108	AL9	F	193	205	Right-handed alpha
Helix 109	AM1	F	215	248	Right-handed alpha
Helix 110	AM2	F	253	266	Right-handed alpha
Helix 111	AM3	F	272	313	Right-handed alpha
Helix 112	AM4	G	11	19	Right-handed alpha
Helix 113	AM5	G	25	35	Right-handed alpha
Helix 114	AM6	G	43	48	Right-handed alpha
Helix 115	AM7	G	49	54	Right-handed alpha
Helix 116	AM8	G	60	73	Right-handed alpha
Helix 117	AM9	G	74	81	Right-handed alpha
Helix 118	AN1	G	82	85	Right-handed 310
Helix 119	AN2	G	89	108	Right-handed alpha
Helix 120	AN3	G	113	121	Right-handed alpha
Helix 121	AN4	G	124	138	Right-handed alpha
Helix 122	AN5	G	166	225	Right-handed alpha
Helix 123	AN6	H	12	26	Right-handed alpha
Helix 124	AN7	H	33	47	Right-handed alpha
Helix 125	AN8	H	49	60	Right-handed alpha
Helix 126	AN9	H	61	66	Right-handed alpha
Helix 127	AO1	H	69	83	Right-handed alpha
Helix 128	AO2	H	85	94	Right-handed alpha
Helix 129	AO3	H	102	124	Right-handed alpha
Helix 130	AO4	H	130	138	Right-handed alpha
Helix 131	AO5	H	140	151	Right-handed alpha
Helix 132	AO6	H	196	208	Right-handed alpha
Helix 133	AO7	I	17	31	Right-handed alpha
Helix 134	AO8	I	38	54	Right-handed alpha
Helix 135	AO9	I	85	108	Right-handed alpha
Helix 136	AP1	I	111	137	Right-handed alpha
Helix 137	AP2	I	137	151	Right-handed alpha
Helix 138	AP3	I	158	172	Right-handed alpha
Helix 139	AP4	I	173	188	Right-handed alpha
Helix 140	AP5	I	189	192	Right-handed 310
Helix 141	AP6	I	198	211	Right-handed alpha
Helix 142	AP7	I	226	254	Right-handed alpha
Helix 143	AP8	I	259	279	Right-handed alpha
Helix 144	AP9	I	283	297	Right-handed alpha
Helix 145	AQ1	I	299	313	Right-handed alpha
Helix 146	AQ2	I	318	327	Right-handed alpha
Helix 147	AQ3	I	335	354	Right-handed alpha
Helix 148	AQ4	I	357	361	Right-handed 310
Helix 149	AQ5	I	362	384	Right-handed alpha
Helix 150	AQ6	I	388	404	Right-handed alpha
Helix 151	AQ7	I	406	410	Right-handed 310
Helix 152	AQ8	I	417	430	Right-handed alpha
Helix 153	AQ9	I	438	454	Right-handed alpha
Helix 154	AR1	I	458	477	Right-handed alpha
Helix 155	AR2	I	481	496	Right-handed alpha
Helix 156	AR3	I	497	500	Right-handed 310
Helix 157	AR4	I	501	526	Right-handed alpha
Helix 158	AR5	I	556	559	Right-handed 310
Helix 159	AR6	I	560	574	Right-handed alpha
Helix 160	AR7	I	604	613	Right-handed alpha
Helix 161	AR8	I	614	616	Right-handed 310
Helix 162	AR9	I	621	630	Right-handed alpha
Helix 163	AS1	I	632	644	Right-handed alpha
Helix 164	AS2	J	53	59	Right-handed alpha
Helix 165	AS3	J	62	66	Right-handed 310
Helix 166	AS4	J	81	88	Right-handed alpha
Helix 167	AS5	L	17	23	Right-handed alpha
Helix 168	AS6	L	25	33	Right-handed alpha
Helix 169	AS7	L	51	65	Right-handed alpha
Helix 170	AS8	L	89	93	Right-handed alpha
Helix 171	AS9	L	99	111	Right-handed alpha
Helix 172	AT1	L	113	126	Right-handed alpha
Helix 173	AT2	L	134	139	Right-handed alpha
Helix 174	AT3	L	149	157	Right-handed alpha
Helix 175	AT4	M	101	110	Right-handed alpha
Helix 176	AT5	M	113	121	Right-handed alpha
Helix 177	AT6	M	124	132	Right-handed alpha
Helix 178	AT7	M	148	158	Right-handed alpha
Helix 179	AT8	M	194	203	Right-handed alpha
Helix 180	AT9	M	219	227	Right-handed alpha
Helix 181	AU1	M	244	255	Right-handed alpha
Helix 182	AU2	M	270	281	Right-handed alpha
Helix 183	AU3	M	298	307	Right-handed alpha
Helix 184	AU4	M	324	328	Right-handed 310
Helix 185	AU5	M	330	334	Right-handed 310
Helix 186	AU6	M	352	359	Right-handed 310
Helix 187	AU7	M	374	383	Right-handed alpha
Helix 188	AU8	N	25	30	Right-handed alpha
Helix 189	AU9	N	39	47	Right-handed alpha

There are 14 sheets in PDB entry 9QO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	141	146	anti-parallel
Strand 4	D	316	320	parallel
Strand 5	D	358	360	anti-parallel
Strand 6	D	351	353	anti-parallel
Strand 7	B	366	370	parallel
Strand 8	B	408	411	anti-parallel
Strand 9	B	400	403	anti-parallel
Strand 10	A	381	385	parallel
Strand 11	A	423	426	anti-parallel
Strand 12	A	415	418	anti-parallel
Strand 13	C	314	318	parallel
Strand 14	C	357	360	anti-parallel
Strand 15	C	349	352	anti-parallel
Strand 16	H	125	129	parallel
Strand 17	H	161	163	anti-parallel
Strand 18	H	154	156	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	168	169	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	89	97	parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	135	139	anti-parallel
Strand 5	E	166	170	parallel
Strand 6	E	183	188	anti-parallel
Strand 7	E	221	229	anti-parallel
Strand 8	E	54	58	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	186	first strand
Strand 2	F	165	175	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	120	127	parallel
Strand 5	F	69	75	anti-parallel
Strand 6	F	80	88	anti-parallel
Strand 7	F	40	43	parallel
Strand 8	F	188	190	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	98	99	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	534	540	first strand
Strand 2	J	26	35	parallel
Strand 3	I	577	579	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	534	540	first strand
Strand 2	J	26	35	parallel
Strand 3	I	582	588	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	600	601	first strand
Strand 2	I	590	592	anti-parallel
Strand 3	J	22	23	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	71	first strand
Strand 2	J	79	80	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	185	187	first strand
Strand 2	M	162	164	parallel
Strand 3	M	139	141	parallel
Strand 4	M	416	417	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	210	212	first strand
Strand 2	M	234	238	parallel
Strand 3	M	260	264	parallel
Strand 4	M	287	289	parallel
Strand 5	M	314	316	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	339	341	first strand
Strand 2	M	364	366	parallel
Strand 3	M	387	388	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	8	first strand
Strand 2	N	18	23	anti-parallel
Strand 3	N	12	13	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	8	first strand
Strand 2	N	18	23	anti-parallel
Strand 3	N	66	71	anti-parallel
Strand 4	N	55	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO4