Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QO6 entry

There are 9 chains in PDB entry 9QO6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 24	ILE 333
A	LEU 42	PRO 469
B	LEU 309	ALA 443
C	SER 3	GLY 409
D	VAL 141	GLN 406
F	SER 29	ASP 314
G	ASN 10	THR 223
H	PHE 11	ASN 209
P	LYS 37	GLN 57

There are108 helices in PDB entry 9QO6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	26	30	Right-handed 310
Helix 2	AA2	E	32	42	Right-handed alpha
Helix 3	AA3	E	44	49	Right-handed alpha
Helix 4	AA4	E	59	72	Right-handed alpha
Helix 5	AA5	E	108	125	Right-handed alpha
Helix 6	AA6	E	148	160	Right-handed alpha
Helix 7	AA7	E	171	179	Right-handed alpha
Helix 8	AA8	E	210	217	Right-handed alpha
Helix 9	AA9	E	231	240	Right-handed alpha
Helix 10	AB1	E	241	244	Right-handed 310
Helix 11	AB2	E	245	251	Right-handed alpha
Helix 12	AB3	E	258	281	Right-handed alpha
Helix 13	AB4	E	298	329	Right-handed alpha
Helix 14	AB5	A	53	66	Right-handed alpha
Helix 15	AB6	A	67	71	Right-handed 310
Helix 16	AB7	A	72	83	Right-handed alpha
Helix 17	AB8	A	88	103	Right-handed alpha
Helix 18	AB9	A	129	156	Right-handed alpha
Helix 19	AC1	A	157	175	Right-handed alpha
Helix 20	AC2	A	177	187	Right-handed alpha
Helix 21	AC3	A	194	212	Right-handed alpha
Helix 22	AC4	A	214	227	Right-handed alpha
Helix 23	AC5	A	247	260	Right-handed alpha
Helix 24	AC6	A	262	271	Right-handed alpha
Helix 25	AC7	A	285	299	Right-handed alpha
Helix 26	AC8	A	302	310	Right-handed alpha
Helix 27	AC9	A	313	323	Right-handed alpha
Helix 28	AD1	A	323	335	Right-handed alpha
Helix 29	AD2	A	340	346	Right-handed alpha
Helix 30	AD3	A	361	379	Right-handed alpha
Helix 31	AD4	A	386	392	Right-handed alpha
Helix 32	AD5	A	396	410	Right-handed alpha
Helix 33	AD6	A	430	463	Right-handed alpha
Helix 34	AD7	B	310	321	Right-handed alpha
Helix 35	AD8	B	322	333	Right-handed alpha
Helix 36	AD9	B	334	339	Right-handed alpha
Helix 37	AE1	B	340	363	Right-handed alpha
Helix 38	AE2	B	371	379	Right-handed alpha
Helix 39	AE3	B	381	395	Right-handed alpha
Helix 40	AE4	B	418	441	Right-handed alpha
Helix 41	AE5	C	4	16	Right-handed alpha
Helix 42	AE6	C	22	31	Right-handed alpha
Helix 43	AE7	C	32	37	Right-handed alpha
Helix 44	AE8	C	38	40	Right-handed 310
Helix 45	AE9	C	41	49	Right-handed alpha
Helix 46	AF1	C	56	66	Right-handed alpha
Helix 47	AF2	C	73	87	Right-handed alpha
Helix 48	AF3	C	89	94	Right-handed alpha
Helix 49	AF4	C	98	115	Right-handed alpha
Helix 50	AF5	C	116	118	Right-handed 310
Helix 51	AF6	C	119	130	Right-handed alpha
Helix 52	AF7	C	141	152	Right-handed alpha
Helix 53	AF8	C	158	162	Right-handed 310
Helix 54	AF9	C	177	195	Right-handed alpha
Helix 55	AG1	C	197	211	Right-handed alpha
Helix 56	AG2	C	217	235	Right-handed alpha
Helix 57	AG3	C	253	256	Right-handed 310
Helix 58	AG4	C	257	269	Right-handed alpha
Helix 59	AG5	C	271	282	Right-handed alpha
Helix 60	AG6	C	282	289	Right-handed alpha
Helix 61	AG7	C	294	311	Right-handed alpha
Helix 62	AG8	C	320	326	Right-handed alpha
Helix 63	AG9	C	329	345	Right-handed alpha
Helix 64	AH1	C	371	399	Right-handed alpha
Helix 65	AH2	C	400	409	Right-handed alpha
Helix 66	AH3	D	142	158	Right-handed alpha
Helix 67	AH4	D	160	172	Right-handed alpha
Helix 68	AH5	D	180	198	Right-handed alpha
Helix 69	AH6	D	200	213	Right-handed alpha
Helix 70	AH7	D	218	236	Right-handed alpha
Helix 71	AH8	D	239	252	Right-handed alpha
Helix 72	AH9	D	254	258	Right-handed 310
Helix 73	AI1	D	260	270	Right-handed alpha
Helix 74	AI2	D	274	283	Right-handed alpha
Helix 75	AI3	D	284	285	Right-handed 310
Helix 76	AI4	D	286	290	Right-handed 310
Helix 77	AI5	D	298	313	Right-handed alpha
Helix 78	AI6	D	321	329	Right-handed alpha
Helix 79	AI7	D	331	345	Right-handed alpha
Helix 80	AI8	D	365	392	Right-handed alpha
Helix 81	AI9	D	392	406	Right-handed alpha
Helix 82	AJ1	F	44	63	Right-handed alpha
Helix 83	AJ2	F	101	116	Right-handed alpha
Helix 84	AJ3	F	132	144	Right-handed alpha
Helix 85	AJ4	F	193	206	Right-handed alpha
Helix 86	AJ5	F	216	248	Right-handed alpha
Helix 87	AJ6	F	254	265	Right-handed alpha
Helix 88	AJ7	F	272	313	Right-handed alpha
Helix 89	AJ8	G	11	19	Right-handed alpha
Helix 90	AJ9	G	26	37	Right-handed alpha
Helix 91	AK1	G	45	48	Right-handed 310
Helix 92	AK2	G	49	54	Right-handed alpha
Helix 93	AK3	G	60	73	Right-handed alpha
Helix 94	AK4	G	74	81	Right-handed alpha
Helix 95	AK5	G	89	106	Right-handed alpha
Helix 96	AK6	G	113	121	Right-handed alpha
Helix 97	AK7	G	124	138	Right-handed alpha
Helix 98	AK8	G	166	222	Right-handed alpha
Helix 99	AK9	H	12	26	Right-handed alpha
Helix 100	AL1	H	33	48	Right-handed alpha
Helix 101	AL2	H	49	60	Right-handed alpha
Helix 102	AL3	H	61	68	Right-handed alpha
Helix 103	AL4	H	69	83	Right-handed alpha
Helix 104	AL5	H	85	94	Right-handed alpha
Helix 105	AL6	H	102	124	Right-handed alpha
Helix 106	AL7	H	130	138	Right-handed alpha
Helix 107	AL8	H	140	152	Right-handed alpha
Helix 108	AL9	H	196	209	Right-handed alpha

There are 6 sheets in PDB entry 9QO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	58	first strand
Strand 2	E	89	97	parallel
Strand 3	E	78	86	anti-parallel
Strand 4	E	135	139	anti-parallel
Strand 5	E	166	170	parallel
Strand 6	E	183	188	anti-parallel
Strand 7	E	221	229	anti-parallel
Strand 8	E	54	58	parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	352	first strand
Strand 2	C	357	360	anti-parallel
Strand 3	C	314	318	anti-parallel
Strand 4	A	415	418	parallel
Strand 5	A	423	426	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	B	400	403	parallel
Strand 8	B	408	411	anti-parallel
Strand 9	B	366	370	anti-parallel
Strand 10	D	350	353	parallel
Strand 11	D	358	361	anti-parallel
Strand 12	D	316	320	anti-parallel
Strand 13	G	141	146	parallel
Strand 14	G	151	157	anti-parallel
Strand 15	G	110	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	168	169	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	185	first strand
Strand 2	F	165	175	anti-parallel
Strand 3	F	150	154	anti-parallel
Strand 4	F	120	127	parallel
Strand 5	F	72	77	anti-parallel
Strand 6	F	80	85	anti-parallel
Strand 7	F	40	43	parallel
Strand 8	F	188	190	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	97	100	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	161	163	anti-parallel
Strand 3	H	154	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QO6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QO6