Analysis of interatomic Contacts of Structural Units in PDB entry:
9QOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QOO entry

There are 12 chains in PDB entry 9QOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	ILE 1041
B	PHE 142	SER 202
C	PHE 69	SER 202
D	PHE 69	VAL 182
F	ILE 3	LYS 244
G	GLY 4	ARG 245
I	LEU 141	THR 185
O	GLU 2	ILE 232
P	SER 2	ARG 249
Q	SER 2	GLU 238
R	MET 1	ILE 241
S	PHE 2	GLU 237

There are125 helices in PDB entry 9QOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	33	Right-handed alpha
Helix 2	AA2	A	36	51	Right-handed alpha
Helix 3	AA3	A	55	66	Right-handed alpha
Helix 4	AA4	A	70	89	Right-handed alpha
Helix 5	AA5	A	102	113	Right-handed alpha
Helix 6	AA6	A	114	117	Right-handed 310
Helix 7	AA7	A	121	138	Right-handed alpha
Helix 8	AA8	A	145	157	Right-handed alpha
Helix 9	AA9	A	159	176	Right-handed alpha
Helix 10	AB1	A	181	199	Right-handed alpha
Helix 11	AB2	A	204	224	Right-handed alpha
Helix 12	AB3	A	225	229	Right-handed 310
Helix 13	AB4	A	230	253	Right-handed alpha
Helix 14	AB5	A	261	279	Right-handed alpha
Helix 15	AB6	A	280	282	Right-handed 310
Helix 16	AB7	A	283	306	Right-handed alpha
Helix 17	AB8	A	330	346	Right-handed alpha
Helix 18	AB9	A	347	355	Right-handed 310
Helix 19	AC1	A	356	368	Right-handed alpha
Helix 20	AC2	A	371	381	Right-handed alpha
Helix 21	AC3	A	381	389	Right-handed alpha
Helix 22	AC4	A	397	410	Right-handed alpha
Helix 23	AC5	A	414	416	Right-handed 310
Helix 24	AC6	A	417	438	Right-handed alpha
Helix 25	AC7	A	440	447	Right-handed alpha
Helix 26	AC8	A	448	467	Right-handed alpha
Helix 27	AC9	A	473	480	Right-handed alpha
Helix 28	AD1	A	482	488	Right-handed 310
Helix 29	AD2	A	491	496	Right-handed alpha
Helix 30	AD3	A	496	506	Right-handed alpha
Helix 31	AD4	A	507	509	Right-handed 310
Helix 32	AD5	A	510	525	Right-handed alpha
Helix 33	AD6	A	530	550	Right-handed alpha
Helix 34	AD7	A	551	558	Right-handed 310
Helix 35	AD8	A	560	573	Right-handed alpha
Helix 36	AD9	A	574	576	Right-handed 310
Helix 37	AE1	A	577	592	Right-handed alpha
Helix 38	AE2	A	594	616	Right-handed alpha
Helix 39	AE3	A	619	635	Right-handed alpha
Helix 40	AE4	A	636	638	Right-handed 310
Helix 41	AE5	A	639	657	Right-handed alpha
Helix 42	AE6	A	665	681	Right-handed alpha
Helix 43	AE7	A	686	692	Right-handed alpha
Helix 44	AE8	A	692	704	Right-handed alpha
Helix 45	AE9	A	706	731	Right-handed alpha
Helix 46	AF1	A	738	751	Right-handed alpha
Helix 47	AF2	A	758	761	Right-handed 310
Helix 48	AF3	A	762	779	Right-handed alpha
Helix 49	AF4	A	781	796	Right-handed alpha
Helix 50	AF5	A	798	815	Right-handed alpha
Helix 51	AF6	A	816	827	Right-handed alpha
Helix 52	AF7	A	834	845	Right-handed alpha
Helix 53	AF8	A	846	850	Right-handed 310
Helix 54	AF9	A	852	874	Right-handed alpha
Helix 55	AG1	A	912	929	Right-handed alpha
Helix 56	AG2	A	930	932	Right-handed 310
Helix 57	AG3	A	993	996	Right-handed 310
Helix 58	AG4	A	997	1002	Right-handed alpha
Helix 59	AG5	A	1003	1010	Right-handed alpha
Helix 60	AG6	A	1011	1016	Right-handed alpha
Helix 61	AG7	A	1019	1025	Right-handed alpha
Helix 62	AG8	A	1026	1028	Right-handed 310
Helix 63	AG9	A	1029	1039	Right-handed alpha
Helix 64	AH1	B	143	194	Right-handed alpha
Helix 65	AH2	C	77	93	Right-handed alpha
Helix 66	AH3	C	94	97	Right-handed 310
Helix 67	AH4	C	143	188	Right-handed alpha
Helix 68	AH5	D	69	73	Right-handed 310
Helix 69	AH6	D	77	96	Right-handed alpha
Helix 70	AH7	D	143	182	Right-handed alpha
Helix 71	AH8	F	20	33	Right-handed alpha
Helix 72	AH9	F	80	103	Right-handed alpha
Helix 73	AI1	F	107	122	Right-handed alpha
Helix 74	AI2	F	168	177	Right-handed alpha
Helix 75	AI3	F	178	179	Right-handed 310
Helix 76	AI4	F	180	184	Right-handed 310
Helix 77	AI5	F	185	200	Right-handed alpha
Helix 78	AI6	F	228	242	Right-handed alpha
Helix 79	AI7	G	22	33	Right-handed alpha
Helix 80	AI8	G	34	36	Right-handed 310
Helix 81	AI9	G	83	106	Right-handed alpha
Helix 82	AJ1	G	110	126	Right-handed alpha
Helix 83	AJ2	G	171	185	Right-handed alpha
Helix 84	AJ3	G	190	207	Right-handed alpha
Helix 85	AJ4	G	231	243	Right-handed alpha
Helix 86	AJ5	I	143	182	Right-handed alpha
Helix 87	AJ6	I	183	185	Right-handed 310
Helix 88	AJ7	O	19	30	Right-handed alpha
Helix 89	AJ8	O	79	101	Right-handed alpha
Helix 90	AJ9	O	105	120	Right-handed alpha
Helix 91	AK1	O	165	177	Right-handed alpha
Helix 92	AK2	O	182	196	Right-handed alpha
Helix 93	AK3	O	203	207	Right-handed 310
Helix 94	AK4	O	221	231	Right-handed alpha
Helix 95	AK5	P	18	29	Right-handed alpha
Helix 96	AK6	P	79	102	Right-handed alpha
Helix 97	AK7	P	106	121	Right-handed alpha
Helix 98	AK8	P	167	179	Right-handed alpha
Helix 99	AK9	P	185	201	Right-handed alpha
Helix 100	AL1	P	207	209	Right-handed 310
Helix 101	AL2	P	229	246	Right-handed alpha
Helix 102	AL3	Q	17	27	Right-handed alpha
Helix 103	AL4	Q	55	60	Right-handed alpha
Helix 104	AL5	Q	76	98	Right-handed alpha
Helix 105	AL6	Q	103	121	Right-handed alpha
Helix 106	AL7	Q	164	176	Right-handed alpha
Helix 107	AL8	Q	179	182	Right-handed 310
Helix 108	AL9	Q	183	196	Right-handed alpha
Helix 109	AM1	Q	221	237	Right-handed alpha
Helix 110	AM2	R	5	9	Right-handed 310
Helix 111	AM3	R	21	33	Right-handed alpha
Helix 112	AM4	R	60	64	Right-handed 310
Helix 113	AM5	R	81	104	Right-handed alpha
Helix 114	AM6	R	108	119	Right-handed alpha
Helix 115	AM7	R	173	183	Right-handed alpha
Helix 116	AM8	R	190	206	Right-handed alpha
Helix 117	AM9	R	230	239	Right-handed alpha
Helix 118	AN1	S	19	30	Right-handed alpha
Helix 119	AN2	S	77	99	Right-handed alpha
Helix 120	AN3	S	104	118	Right-handed alpha
Helix 121	AN4	S	119	121	Right-handed 310
Helix 122	AN5	S	165	175	Right-handed alpha
Helix 123	AN6	S	175	180	Right-handed alpha
Helix 124	AN7	S	183	198	Right-handed alpha
Helix 125	AN8	S	229	234	Right-handed alpha

There are 16 sheets in PDB entry 9QOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	36	40	anti-parallel
Strand 3	F	44	52	anti-parallel
Strand 4	F	209	217	anti-parallel
Strand 5	F	225	226	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	68	first strand
Strand 2	F	74	79	anti-parallel
Strand 3	F	133	139	anti-parallel
Strand 4	F	147	151	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	229	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	82	first strand
Strand 2	G	136	141	anti-parallel
Strand 3	G	151	154	anti-parallel
Strand 4	G	160	162	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	13	first strand
Strand 2	O	17	18	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	159	162	first strand
Strand 2	O	34	38	anti-parallel
Strand 3	O	43	47	anti-parallel
Strand 4	O	210	213	anti-parallel
Strand 5	O	216	219	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	65	66	first strand
Strand 2	O	71	77	anti-parallel
Strand 3	O	131	138	anti-parallel
Strand 4	O	143	148	anti-parallel
Strand 5	O	154	156	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	161	164	first strand
Strand 2	P	34	39	anti-parallel
Strand 3	P	42	48	anti-parallel
Strand 4	P	211	219	anti-parallel
Strand 5	P	222	227	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	65	67	first strand
Strand 2	P	72	78	anti-parallel
Strand 3	P	132	140	anti-parallel
Strand 4	P	144	150	anti-parallel
Strand 5	P	156	158	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	11	first strand
Strand 2	Q	15	16	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	158	161	first strand
Strand 2	Q	32	36	anti-parallel
Strand 3	Q	40	46	anti-parallel
Strand 4	Q	206	212	anti-parallel
Strand 5	Q	215	219	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	63	64	first strand
Strand 2	Q	69	73	anti-parallel
Strand 3	Q	131	136	anti-parallel
Strand 4	Q	142	147	anti-parallel
Strand 5	Q	153	155	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	167	170	first strand
Strand 2	R	37	41	anti-parallel
Strand 3	R	46	51	anti-parallel
Strand 4	R	215	220	anti-parallel
Strand 5	R	227	228	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	67	71	first strand
Strand 2	R	74	80	anti-parallel
Strand 3	R	139	147	anti-parallel
Strand 4	R	150	156	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	158	161	first strand
Strand 2	S	35	39	anti-parallel
Strand 3	S	43	48	anti-parallel
Strand 4	S	211	216	anti-parallel
Strand 5	S	222	225	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	63	67	first strand
Strand 2	S	70	76	anti-parallel
Strand 3	S	130	136	anti-parallel
Strand 4	S	143	148	anti-parallel
Strand 5	S	152	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QOO