Analysis of interatomic Contacts of Structural Units in PDB entry:
9QOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QOQ entry

There are 8 chains in PDB entry 9QOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 24	ASN 246
D	ILE 24	ASN 246
C	PHE 16	ALA 150
A	THR 12	ALA 150
E	ASN 15	ALA 150
G	LYS 17	ALA 150
F	ILE 24	ASN 246
H	ILE 24	ASN 246

There are 19 helices in PDB entry 9QOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	61	65	Right-handed 310
Helix 2	AA2	B	167	175	Right-handed alpha
Helix 3	AA3	B	235	246	Right-handed alpha
Helix 4	AA4	D	61	65	Right-handed 310
Helix 5	AA5	D	167	175	Right-handed alpha
Helix 6	AA6	D	235	246	Right-handed alpha
Helix 7	AA7	C	38	45	Right-handed alpha
Helix 8	AA8	C	98	103	Right-handed 310
Helix 9	AA9	A	38	45	Right-handed alpha
Helix 10	AB1	A	98	103	Right-handed 310
Helix 11	AB2	E	38	45	Right-handed alpha
Helix 12	AB3	E	98	103	Right-handed 310
Helix 13	AB4	G	38	45	Right-handed alpha
Helix 14	AB5	F	61	65	Right-handed 310
Helix 15	AB6	F	167	175	Right-handed alpha
Helix 16	AB7	F	235	246	Right-handed alpha
Helix 17	AB8	H	61	65	Right-handed 310
Helix 18	AB9	H	167	175	Right-handed alpha
Helix 19	AC1	H	235	246	Right-handed alpha

There are 16 sheets in PDB entry 9QOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	159	164	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	203	206	anti-parallel
Strand 5	B	209	217	anti-parallel
Strand 6	A	81	93	anti-parallel
Strand 7	A	125	130	parallel
Strand 8	A	27	32	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	227	231	anti-parallel
Strand 3	B	209	217	anti-parallel
Strand 4	A	81	93	anti-parallel
Strand 5	A	64	74	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	46	54	anti-parallel
Strand 3	B	57	60	anti-parallel
Strand 4	B	109	113	anti-parallel
Strand 5	B	86	95	anti-parallel
Strand 6	B	70	73	anti-parallel
Strand 7	B	38	42	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	159	164	anti-parallel
Strand 3	D	138	143	anti-parallel
Strand 4	D	203	206	anti-parallel
Strand 5	D	209	217	anti-parallel
Strand 6	C	81	93	anti-parallel
Strand 7	C	125	130	parallel
Strand 8	C	27	32	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	227	231	anti-parallel
Strand 3	D	209	217	anti-parallel
Strand 4	C	81	93	anti-parallel
Strand 5	C	64	74	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	42	first strand
Strand 2	D	46	54	anti-parallel
Strand 3	D	57	60	anti-parallel
Strand 4	D	109	113	anti-parallel
Strand 5	D	86	95	anti-parallel
Strand 6	D	70	73	anti-parallel
Strand 7	D	38	42	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	110	first strand
Strand 2	C	46	58	anti-parallel
Strand 3	C	134	147	anti-parallel
Strand 4	A	133	147	anti-parallel
Strand 5	A	46	58	anti-parallel
Strand 6	A	105	110	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	46	58	anti-parallel
Strand 3	C	134	147	anti-parallel
Strand 4	A	133	147	anti-parallel
Strand 5	A	46	58	anti-parallel
Strand 6	A	117	118	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	32	first strand
Strand 2	E	125	130	anti-parallel
Strand 3	E	81	93	parallel
Strand 4	F	209	217	anti-parallel
Strand 5	F	203	206	anti-parallel
Strand 6	F	138	143	anti-parallel
Strand 7	F	159	164	anti-parallel
Strand 8	F	28	29	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	74	first strand
Strand 2	E	81	93	anti-parallel
Strand 3	F	209	217	anti-parallel
Strand 4	F	227	231	anti-parallel
Strand 5	F	183	186	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	110	first strand
Strand 2	E	46	58	anti-parallel
Strand 3	E	134	147	anti-parallel
Strand 4	G	134	147	anti-parallel
Strand 5	G	46	58	anti-parallel
Strand 6	G	105	110	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	118	first strand
Strand 2	E	46	58	anti-parallel
Strand 3	E	134	147	anti-parallel
Strand 4	G	134	147	anti-parallel
Strand 5	G	46	58	anti-parallel
Strand 6	G	117	118	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	32	first strand
Strand 2	G	125	130	anti-parallel
Strand 3	G	81	93	parallel
Strand 4	H	209	217	anti-parallel
Strand 5	H	203	206	anti-parallel
Strand 6	H	138	143	anti-parallel
Strand 7	H	159	164	anti-parallel
Strand 8	H	28	29	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	74	first strand
Strand 2	G	81	93	anti-parallel
Strand 3	H	209	217	anti-parallel
Strand 4	H	227	231	anti-parallel
Strand 5	H	183	186	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	46	54	anti-parallel
Strand 3	F	57	60	anti-parallel
Strand 4	F	109	113	anti-parallel
Strand 5	F	86	95	anti-parallel
Strand 6	F	70	73	anti-parallel
Strand 7	F	38	42	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	42	first strand
Strand 2	H	46	54	anti-parallel
Strand 3	H	57	60	anti-parallel
Strand 4	H	109	113	anti-parallel
Strand 5	H	86	95	anti-parallel
Strand 6	H	70	73	anti-parallel
Strand 7	H	38	42	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QOQ