Analysis of interatomic Contacts of Structural Units in PDB entry:
9QOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QOY entry

There are 2 chains in PDB entry 9QOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -7PHE 257
B
 ALA -7PHE 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9QOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-7 1Right-handed 310
Helix 2
AA2
A
2 6Right-handed 310
Helix 3
AA3
A
49 63Right-handed alpha
Helix 4
AA4
A
92 98Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
120 125Right-handed 310
Helix 7
AA7
A
130 144Right-handed alpha
Helix 8
AA8
A
148 152Right-handed 310
Helix 9
AA9
A
160 171Right-handed alpha
Helix 10
AB1
A
186 188Right-handed 310
Helix 11
AB2
A
211 227Right-handed alpha
Helix 12
AB3
A
227 239Right-handed alpha
Helix 13
AB4
A
243 255Right-handed alpha
Helix 14
AB5
B
2 6Right-handed 310
Helix 15
AB6
B
49 63Right-handed alpha
Helix 16
AB7
B
92 98Right-handed alpha
Helix 17
AB8
B
102 119Right-handed alpha
Helix 18
AB9
B
120 125Right-handed 310
Helix 19
AC1
B
130 144Right-handed alpha
Helix 20
AC2
B
148 152Right-handed 310
Helix 21
AC3
B
160 171Right-handed alpha
Helix 22
AC4
B
186 188Right-handed 310
Helix 23
AC5
B
211 227Right-handed alpha
Helix 24
AC6
B
227 239Right-handed alpha
Helix 25
AC7
B
243 255Right-handed alpha
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There are 6 sheets in PDB entry 9QOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
24 30anti-parallel
Strand 3
A
37 43anti-parallel
Strand 4
A
79 85anti-parallel
Strand 5
A
70 76anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
190 193anti-parallel
Strand 3
A
196 200anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
207 210anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
26 30anti-parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
79 85anti-parallel
Strand 5
B
70 76anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
190 193anti-parallel
Strand 3
B
196 200anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
207 210anti-parallel
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