Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QPP entry

There are 6 chains in PDB entry 9QPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 13	TYR 395
E	GLU 5	HIS 334
A	ILE 13	TYR 395
C	GLU 14	TYR 395
D	GLY 16	TYR 395
F	GLU 7	HIS 337

There are 67 helices in PDB entry 9QPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	29	49	Right-handed alpha
Helix 2	AA2	B	78	91	Right-handed alpha
Helix 3	AA3	B	95	98	Right-handed 310
Helix 4	AA4	B	151	170	Right-handed alpha
Helix 5	AA5	B	214	225	Right-handed alpha
Helix 6	AA6	B	226	231	Right-handed alpha
Helix 7	AA7	B	232	236	Right-handed 310
Helix 8	AA8	B	253	257	Right-handed 310
Helix 9	AA9	B	265	270	Right-handed alpha
Helix 10	AB1	B	289	308	Right-handed alpha
Helix 11	AB2	B	341	353	Right-handed alpha
Helix 12	AB3	B	356	365	Right-handed alpha
Helix 13	AB4	B	370	374	Right-handed 310
Helix 14	AB5	B	385	389	Right-handed 310
Helix 15	AB6	E	38	50	Right-handed alpha
Helix 16	AB7	E	74	86	Right-handed alpha
Helix 17	AB8	E	98	103	Right-handed alpha
Helix 18	AB9	E	105	114	Right-handed alpha
Helix 19	AC1	E	114	128	Right-handed alpha
Helix 20	AC2	E	138	140	Right-handed 310
Helix 21	AC3	E	157	174	Right-handed alpha
Helix 22	AC4	E	191	195	Right-handed 310
Helix 23	AC5	E	200	206	Right-handed alpha
Helix 24	AC6	E	224	241	Right-handed alpha
Helix 25	AC7	E	257	269	Right-handed alpha
Helix 26	AC8	E	297	303	Right-handed alpha
Helix 27	AC9	E	310	320	Right-handed alpha
Helix 28	AD1	E	323	328	Right-handed alpha
Helix 29	AD2	A	29	49	Right-handed alpha
Helix 30	AD3	A	78	91	Right-handed alpha
Helix 31	AD4	A	95	98	Right-handed 310
Helix 32	AD5	A	151	170	Right-handed alpha
Helix 33	AD6	A	214	225	Right-handed alpha
Helix 34	AD7	A	226	231	Right-handed alpha
Helix 35	AD8	A	232	236	Right-handed 310
Helix 36	AD9	A	253	257	Right-handed 310
Helix 37	AE1	A	265	271	Right-handed alpha
Helix 38	AE2	A	289	308	Right-handed alpha
Helix 39	AE3	A	341	353	Right-handed alpha
Helix 40	AE4	A	356	365	Right-handed alpha
Helix 41	AE5	A	385	389	Right-handed 310
Helix 42	AE6	C	29	49	Right-handed alpha
Helix 43	AE7	C	78	91	Right-handed alpha
Helix 44	AE8	C	95	98	Right-handed 310
Helix 45	AE9	C	151	170	Right-handed alpha
Helix 46	AF1	C	214	225	Right-handed alpha
Helix 47	AF2	C	226	231	Right-handed alpha
Helix 48	AF3	C	232	236	Right-handed 310
Helix 49	AF4	C	253	257	Right-handed 310
Helix 50	AF5	C	265	271	Right-handed alpha
Helix 51	AF6	C	289	308	Right-handed alpha
Helix 52	AF7	C	341	353	Right-handed alpha
Helix 53	AF8	C	356	365	Right-handed alpha
Helix 54	AF9	C	385	389	Right-handed 310
Helix 55	AG1	D	29	47	Right-handed alpha
Helix 56	AG2	D	78	91	Right-handed alpha
Helix 57	AG3	D	95	98	Right-handed 310
Helix 58	AG4	D	151	170	Right-handed alpha
Helix 59	AG5	D	214	225	Right-handed alpha
Helix 60	AG6	D	226	231	Right-handed alpha
Helix 61	AG7	D	232	236	Right-handed 310
Helix 62	AG8	D	253	257	Right-handed 310
Helix 63	AG9	D	265	271	Right-handed alpha
Helix 64	AH1	D	289	308	Right-handed alpha
Helix 65	AH2	D	341	353	Right-handed alpha
Helix 66	AH3	D	356	365	Right-handed alpha
Helix 67	AH4	D	385	389	Right-handed 310

There are 21 sheets in PDB entry 9QPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	25	first strand
Strand 2	B	176	191	anti-parallel
Strand 3	B	194	209	anti-parallel
Strand 4	B	241	244	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	113	first strand
Strand 2	B	64	72	parallel
Strand 3	B	53	61	anti-parallel
Strand 4	B	260	261	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	99	100	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	143	first strand
Strand 2	B	313	320	anti-parallel
Strand 3	B	329	333	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	13	first strand
Strand 2	E	16	22	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	54	59	parallel
Strand 3	E	30	33	parallel
Strand 4	E	89	92	parallel
Strand 5	E	130	136	parallel
Strand 6	E	178	182	parallel
Strand 7	E	246	249	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	186	first strand
Strand 2	E	222	223	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	276	279	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	25	first strand
Strand 2	A	176	191	anti-parallel
Strand 3	A	194	209	anti-parallel
Strand 4	A	241	244	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	112	first strand
Strand 2	A	64	72	parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	260	261	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	99	100	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	143	first strand
Strand 2	A	313	320	anti-parallel
Strand 3	A	329	333	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	176	187	anti-parallel
Strand 3	C	199	209	anti-parallel
Strand 4	C	241	244	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	112	first strand
Strand 2	C	64	72	parallel
Strand 3	C	53	61	anti-parallel
Strand 4	C	260	261	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	99	100	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	143	first strand
Strand 2	C	313	320	anti-parallel
Strand 3	C	329	333	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	194	195	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	25	first strand
Strand 2	D	176	191	anti-parallel
Strand 3	D	194	209	anti-parallel
Strand 4	D	241	244	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	112	first strand
Strand 2	D	64	72	parallel
Strand 3	D	53	61	anti-parallel
Strand 4	D	260	261	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	99	100	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	142	first strand
Strand 2	D	314	320	anti-parallel
Strand 3	D	329	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPP