Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QPS entry

There are 3 chains in PDB entry 9QPS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 1035
B	ALA 2	LEU 1030
C	ALA 2	LEU 1030

There are117 helices in PDB entry 9QPS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	8	29	Right-handed alpha
Helix 3	AA3	A	53	60	Right-handed alpha
Helix 4	AA4	A	60	67	Right-handed alpha
Helix 5	AA5	A	99	112	Right-handed alpha
Helix 6	AA6	A	114	118	Right-handed 310
Helix 7	AA7	A	150	162	Right-handed alpha
Helix 8	AA8	A	162	168	Right-handed alpha
Helix 9	AA9	A	189	196	Right-handed alpha
Helix 10	AB1	A	199	211	Right-handed alpha
Helix 11	AB2	A	242	247	Right-handed alpha
Helix 12	AB3	A	263	265	Right-handed 310
Helix 13	AB4	A	298	313	Right-handed alpha
Helix 14	AB5	A	314	317	Right-handed 310
Helix 15	AB6	A	329	360	Right-handed alpha
Helix 16	AB7	A	361	386	Right-handed alpha
Helix 17	AB8	A	391	424	Right-handed alpha
Helix 18	AB9	A	426	438	Right-handed alpha
Helix 19	AC1	A	438	452	Right-handed alpha
Helix 20	AC2	A	454	459	Right-handed 310
Helix 21	AC3	A	461	493	Right-handed alpha
Helix 22	AC4	A	512	532	Right-handed alpha
Helix 23	AC5	A	538	557	Right-handed alpha
Helix 24	AC6	A	581	600	Right-handed alpha
Helix 25	AC7	A	641	653	Right-handed alpha
Helix 26	AC8	A	689	706	Right-handed alpha
Helix 27	AC9	A	730	738	Right-handed alpha
Helix 28	AD1	A	740	753	Right-handed alpha
Helix 29	AD2	A	775	778	Right-handed 310
Helix 30	AD3	A	780	786	Right-handed 310
Helix 31	AD4	A	834	848	Right-handed alpha
Helix 32	AD5	A	859	890	Right-handed alpha
Helix 33	AD6	A	893	900	Right-handed alpha
Helix 34	AD7	A	902	918	Right-handed alpha
Helix 35	AD8	A	922	951	Right-handed alpha
Helix 36	AD9	A	960	984	Right-handed alpha
Helix 37	AE1	A	984	989	Right-handed alpha
Helix 38	AE2	A	994	1035	Right-handed alpha
Helix 39	AE3	B	3	8	Right-handed alpha
Helix 40	AE4	B	10	29	Right-handed alpha
Helix 41	AE5	B	53	61	Right-handed alpha
Helix 42	AE6	B	61	68	Right-handed alpha
Helix 43	AE7	B	99	112	Right-handed alpha
Helix 44	AE8	B	113	118	Right-handed 310
Helix 45	AE9	B	119	126	Right-handed alpha
Helix 46	AF1	B	150	162	Right-handed alpha
Helix 47	AF2	B	162	168	Right-handed alpha
Helix 48	AF3	B	189	196	Right-handed alpha
Helix 49	AF4	B	199	211	Right-handed alpha
Helix 50	AF5	B	242	247	Right-handed alpha
Helix 51	AF6	B	262	265	Right-handed alpha
Helix 52	AF7	B	300	314	Right-handed alpha
Helix 53	AF8	B	315	317	Right-handed 310
Helix 54	AF9	B	329	360	Right-handed alpha
Helix 55	AG1	B	361	387	Right-handed alpha
Helix 56	AG2	B	391	423	Right-handed alpha
Helix 57	AG3	B	426	437	Right-handed alpha
Helix 58	AG4	B	438	458	Right-handed alpha
Helix 59	AG5	B	460	497	Right-handed alpha
Helix 60	AG6	B	515	534	Right-handed alpha
Helix 61	AG7	B	536	555	Right-handed alpha
Helix 62	AG8	B	581	599	Right-handed alpha
Helix 63	AG9	B	631	635	Right-handed 310
Helix 64	AH1	B	641	653	Right-handed alpha
Helix 65	AH2	B	689	706	Right-handed alpha
Helix 66	AH3	B	730	737	Right-handed alpha
Helix 67	AH4	B	740	754	Right-handed alpha
Helix 68	AH5	B	775	778	Right-handed 310
Helix 69	AH6	B	780	784	Right-handed 310
Helix 70	AH7	B	834	849	Right-handed alpha
Helix 71	AH8	B	859	864	Right-handed alpha
Helix 72	AH9	B	870	891	Right-handed alpha
Helix 73	AI1	B	894	901	Right-handed alpha
Helix 74	AI2	B	906	918	Right-handed alpha
Helix 75	AI3	B	922	954	Right-handed alpha
Helix 76	AI4	B	957	969	Right-handed alpha
Helix 77	AI5	B	970	983	Right-handed alpha
Helix 78	AI6	B	984	989	Right-handed alpha
Helix 79	AI7	B	995	1027	Right-handed alpha
Helix 80	AI8	C	2	6	Right-handed 310
Helix 81	AI9	C	8	29	Right-handed alpha
Helix 82	AJ1	C	53	61	Right-handed alpha
Helix 83	AJ2	C	61	68	Right-handed alpha
Helix 84	AJ3	C	99	115	Right-handed alpha
Helix 85	AJ4	C	116	118	Right-handed 310
Helix 86	AJ5	C	119	126	Right-handed alpha
Helix 87	AJ6	C	150	161	Right-handed alpha
Helix 88	AJ7	C	189	196	Right-handed alpha
Helix 89	AJ8	C	199	211	Right-handed alpha
Helix 90	AJ9	C	242	247	Right-handed alpha
Helix 91	AK1	C	298	314	Right-handed alpha
Helix 92	AK2	C	315	317	Right-handed 310
Helix 93	AK3	C	329	359	Right-handed alpha
Helix 94	AK4	C	361	386	Right-handed alpha
Helix 95	AK5	C	391	422	Right-handed alpha
Helix 96	AK6	C	426	438	Right-handed alpha
Helix 97	AK7	C	438	458	Right-handed alpha
Helix 98	AK8	C	461	497	Right-handed alpha
Helix 99	AK9	C	514	532	Right-handed alpha
Helix 100	AL1	C	535	555	Right-handed alpha
Helix 101	AL2	C	581	599	Right-handed alpha
Helix 102	AL3	C	641	653	Right-handed alpha
Helix 103	AL4	C	654	656	Right-handed 310
Helix 104	AL5	C	689	700	Right-handed alpha
Helix 105	AL6	C	730	738	Right-handed alpha
Helix 106	AL7	C	740	753	Right-handed alpha
Helix 107	AL8	C	775	778	Right-handed 310
Helix 108	AL9	C	780	786	Right-handed 310
Helix 109	AM1	C	834	846	Right-handed alpha
Helix 110	AM2	C	859	867	Right-handed alpha
Helix 111	AM3	C	870	891	Right-handed alpha
Helix 112	AM4	C	896	901	Right-handed alpha
Helix 113	AM5	C	902	918	Right-handed alpha
Helix 114	AM6	C	922	953	Right-handed alpha
Helix 115	AM7	C	957	984	Right-handed alpha
Helix 116	AM8	C	984	990	Right-handed alpha
Helix 117	AM9	C	994	1030	Right-handed alpha

There are 24 sheets in PDB entry 9QPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	813	817	anti-parallel
Strand 6	A	820	829	anti-parallel
Strand 7	A	711	716	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	813	817	anti-parallel
Strand 6	A	820	829	anti-parallel
Strand 7	A	678	684	anti-parallel
Strand 8	A	853	857	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	321	328	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	765	773	parallel
Strand 4	A	756	762	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	B	722	729	parallel
Strand 3	B	803	810	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	604	611	anti-parallel
Strand 3	A	622	629	anti-parallel
Strand 4	A	569	575	anti-parallel
Strand 5	A	660	665	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	810	first strand
Strand 2	A	722	729	anti-parallel
Strand 3	C	232	235	parallel
Strand 4	C	217	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	790	first strand
Strand 2	A	796	798	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	813	817	anti-parallel
Strand 6	B	820	824	anti-parallel
Strand 7	B	680	684	anti-parallel
Strand 8	B	853	857	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	178	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	322	328	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	272	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	765	773	parallel
Strand 4	B	755	762	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	233	235	anti-parallel
Strand 3	C	722	729	parallel
Strand 4	C	803	810	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	260	261	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	278	281	anti-parallel
Strand 3	B	604	611	anti-parallel
Strand 4	B	622	629	anti-parallel
Strand 5	B	569	575	anti-parallel
Strand 6	B	662	665	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	678	first strand
Strand 2	B	827	829	anti-parallel
Strand 3	B	711	712	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	790	first strand
Strand 2	B	796	798	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	813	817	anti-parallel
Strand 6	C	820	821	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	141	144	anti-parallel
Strand 4	C	321	324	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	284	291	anti-parallel
Strand 3	C	278	281	anti-parallel
Strand 4	C	604	613	anti-parallel
Strand 5	C	618	629	anti-parallel
Strand 6	C	569	575	anti-parallel
Strand 7	C	662	665	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	765	773	parallel
Strand 4	C	755	762	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	715	716	first strand
Strand 2	C	825	827	anti-parallel
Strand 3	C	678	683	anti-parallel
Strand 4	C	854	857	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	790	first strand
Strand 2	C	796	798	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QPS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPS