Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QPV entry

There is 1 chain in PDB entry 9QPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 36ASP 1167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9QPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
140 149Right-handed alpha
Helix 3
AA3
A
150 158Right-handed alpha
Helix 4
AA4
A
177 185Right-handed alpha
Helix 5
AA5
A
185 190Right-handed alpha
Helix 6
AA6
A
217 222Right-handed alpha
Helix 7
AA7
A
237 242Right-handed alpha
Helix 8
AA8
A
243 244Right-handed 310
Helix 9
AA9
A
245 249Right-handed 310
Helix 10
AB1
A
259 284Right-handed alpha
Helix 11
AB2
A
289 311Right-handed alpha
Helix 12
AB3
A
413 418Right-handed alpha
Helix 13
AB4
A
421 452Right-handed alpha
Helix 14
AB5
A
457 463Right-handed alpha
Helix 15
AB6
A
464 466Right-handed 310
Helix 16
AB7
A
470 486Right-handed alpha
Helix 17
AB8
A
491 505Right-handed alpha
Helix 18
AB9
A
506 510Right-handed 310
Helix 19
AC1
A
512 516Right-handed 310
Helix 20
AC2
A
521 531Right-handed alpha
Helix 21
AC3
A
535 540Right-handed 310
Helix 22
AC4
A
541 554Right-handed alpha
Helix 23
AC5
A
564 578Right-handed alpha
Helix 24
AC6
A
578 599Right-handed alpha
Helix 25
AC7
A
604 612Right-handed alpha
Helix 26
AC8
A
614 627Right-handed alpha
Helix 27
AC9
A
635 671Right-handed alpha
Helix 28
AD1
A
674 703Right-handed alpha
Helix 29
AD2
A
730 746Right-handed alpha
Helix 30
AD3
A
758 784Right-handed alpha
Helix 31
AD4
A
786 831Right-handed alpha
Helix 32
AD5
A
842 847Right-handed alpha
Helix 33
AD6
A
850 860Right-handed alpha
Helix 34
AD7
A
864 876Right-handed alpha
Helix 35
AD8
A
877 890Right-handed alpha
Helix 36
AD9
A
909 914Right-handed alpha
Helix 37
AE1
A
916 920Right-handed 310
Helix 38
AE2
A
923 927Right-handed 310
Helix 39
AE3
A
929 940Right-handed alpha
Helix 40
AE4
A
940 950Right-handed alpha
Helix 41
AE5
A
954 959Right-handed alpha
Helix 42
AE6
A
962 972Right-handed alpha
Helix 43
AE7
A
977 981Right-handed 310
Helix 44
AE8
A
985 998Right-handed alpha
Helix 45
AE9
A
1033 1038Right-handed alpha
Helix 46
AF1
A
1073 1081Right-handed alpha
Helix 47
AF2
A
1161 1165Right-handed 310
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There are 7 sheets in PDB entry 9QPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
38 47anti-parallel
Strand 3
A
122 124anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
38 47anti-parallel
Strand 3
A
253 256parallel
Strand 4
A
175 176anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
129 135anti-parallel
Strand 5
A
159 162anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 633first strand
Strand 2
A
725 728anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1092 1093first strand
Strand 2
A
1022 1028anti-parallel
Strand 3
A
1001 1007anti-parallel
Strand 4
A
1142 1143anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1072first strand
Strand 2
A
1050 1059anti-parallel
Strand 3
A
1107 1120anti-parallel
Strand 4
A
1126 1130anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1067 1072first strand
Strand 2
A
1050 1059anti-parallel
Strand 3
A
1107 1120anti-parallel
Strand 4
A
1133 1135anti-parallel
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