Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QPW entry

There are 4 chains in PDB entry 9QPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 416	PHE 836
B	THR 416	PHE 836
D	THR 416	PHE 836
C	THR 416	PHE 836

There are 64 helices in PDB entry 9QPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	438	441	Right-handed 310
Helix 2	AA2	A	445	459	Right-handed alpha
Helix 3	AA3	A	483	491	Right-handed alpha
Helix 4	AA4	A	504	509	Right-handed alpha
Helix 5	AA5	A	544	565	Right-handed alpha
Helix 6	AA6	A	597	608	Right-handed alpha
Helix 7	AA7	A	617	652	Right-handed alpha
Helix 8	AA8	A	657	664	Right-handed alpha
Helix 9	AA9	A	675	683	Right-handed alpha
Helix 10	AB1	A	686	699	Right-handed alpha
Helix 11	AB2	A	707	717	Right-handed alpha
Helix 12	AB3	A	728	736	Right-handed alpha
Helix 13	AB4	A	765	779	Right-handed alpha
Helix 14	AB5	A	779	790	Right-handed alpha
Helix 15	AB6	A	811	813	Right-handed 310
Helix 16	AB7	A	814	836	Right-handed alpha
Helix 17	AB8	B	438	441	Right-handed 310
Helix 18	AB9	B	445	459	Right-handed alpha
Helix 19	AC1	B	483	491	Right-handed alpha
Helix 20	AC2	B	504	510	Right-handed alpha
Helix 21	AC3	B	537	541	Right-handed 310
Helix 22	AC4	B	544	567	Right-handed alpha
Helix 23	AC5	B	598	607	Right-handed alpha
Helix 24	AC6	B	617	648	Right-handed alpha
Helix 25	AC7	B	657	664	Right-handed alpha
Helix 26	AC8	B	675	683	Right-handed alpha
Helix 27	AC9	B	686	698	Right-handed alpha
Helix 28	AD1	B	707	718	Right-handed alpha
Helix 29	AD2	B	729	736	Right-handed alpha
Helix 30	AD3	B	764	779	Right-handed alpha
Helix 31	AD4	B	779	791	Right-handed alpha
Helix 32	AD5	B	810	836	Right-handed alpha
Helix 33	AD6	D	438	441	Right-handed 310
Helix 34	AD7	D	445	459	Right-handed alpha
Helix 35	AD8	D	483	491	Right-handed alpha
Helix 36	AD9	D	504	510	Right-handed alpha
Helix 37	AE1	D	537	541	Right-handed 310
Helix 38	AE2	D	544	567	Right-handed alpha
Helix 39	AE3	D	598	607	Right-handed alpha
Helix 40	AE4	D	617	648	Right-handed alpha
Helix 41	AE5	D	657	664	Right-handed alpha
Helix 42	AE6	D	675	683	Right-handed alpha
Helix 43	AE7	D	686	698	Right-handed alpha
Helix 44	AE8	D	707	718	Right-handed alpha
Helix 45	AE9	D	729	736	Right-handed alpha
Helix 46	AF1	D	764	779	Right-handed alpha
Helix 47	AF2	D	779	791	Right-handed alpha
Helix 48	AF3	D	810	836	Right-handed alpha
Helix 49	AF4	C	438	441	Right-handed 310
Helix 50	AF5	C	445	459	Right-handed alpha
Helix 51	AF6	C	483	491	Right-handed alpha
Helix 52	AF7	C	504	509	Right-handed alpha
Helix 53	AF8	C	544	565	Right-handed alpha
Helix 54	AF9	C	597	608	Right-handed alpha
Helix 55	AG1	C	617	652	Right-handed alpha
Helix 56	AG2	C	657	664	Right-handed alpha
Helix 57	AG3	C	675	683	Right-handed alpha
Helix 58	AG4	C	686	699	Right-handed alpha
Helix 59	AG5	C	707	717	Right-handed alpha
Helix 60	AG6	C	728	736	Right-handed alpha
Helix 61	AG7	C	765	779	Right-handed alpha
Helix 62	AG8	C	779	790	Right-handed alpha
Helix 63	AG9	C	811	813	Right-handed 310
Helix 64	AH1	C	814	836	Right-handed alpha

There are 18 sheets in PDB entry 9QPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	462	466	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	443	444	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	755	759	anti-parallel
Strand 3	A	511	513	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	670	first strand
Strand 2	A	722	727	parallel
Strand 3	A	522	527	anti-parallel
Strand 4	A	742	745	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	421	first strand
Strand 2	B	462	466	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	430	first strand
Strand 2	B	443	444	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	502	first strand
Strand 2	B	754	759	anti-parallel
Strand 3	B	511	513	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	527	first strand
Strand 2	B	742	745	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	670	first strand
Strand 2	B	722	724	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	421	first strand
Strand 2	D	462	466	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	430	first strand
Strand 2	D	443	444	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	502	first strand
Strand 2	D	754	759	anti-parallel
Strand 3	D	511	513	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	527	first strand
Strand 2	D	742	745	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	668	670	first strand
Strand 2	D	722	724	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	462	466	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	430	first strand
Strand 2	C	443	444	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	755	759	anti-parallel
Strand 3	C	511	513	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	668	670	first strand
Strand 2	C	722	727	parallel
Strand 3	C	522	527	anti-parallel
Strand 4	C	742	745	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPW