Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QPY entry

There are 5 chains in PDB entry 9QPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 20	CYS 669
B	GLN 762	ALA 1413
C	ARG 1465	VAL 1744
D	VAL 2	SER 120
E	LYS 244	LEU 752

There are 46 helices in PDB entry 9QPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	64	Right-handed 310
Helix 2	AA2	A	90	98	Right-handed alpha
Helix 3	AA3	A	99	102	Right-handed 310
Helix 4	AA4	A	115	120	Right-handed alpha
Helix 5	AA5	A	315	327	Right-handed alpha
Helix 6	AA6	A	329	333	Right-handed 310
Helix 7	AA7	A	606	611	Right-handed alpha
Helix 8	AA8	A	620	630	Right-handed alpha
Helix 9	AA9	A	642	650	Right-handed alpha
Helix 10	AB1	B	996	1002	Right-handed alpha
Helix 11	AB2	B	1014	1032	Right-handed alpha
Helix 12	AB3	B	1040	1058	Right-handed alpha
Helix 13	AB4	B	1075	1090	Right-handed alpha
Helix 14	AB5	B	1096	1109	Right-handed alpha
Helix 15	AB6	B	1137	1156	Right-handed alpha
Helix 16	AB7	B	1161	1186	Right-handed alpha
Helix 17	AB8	B	1189	1203	Right-handed alpha
Helix 18	AB9	B	1206	1221	Right-handed alpha
Helix 19	AC1	B	1258	1275	Right-handed alpha
Helix 20	AC2	B	1281	1294	Right-handed alpha
Helix 21	AC3	B	1302	1320	Right-handed alpha
Helix 22	AC4	C	1497	1507	Right-handed alpha
Helix 23	AC5	C	1612	1619	Right-handed alpha
Helix 24	AC6	C	1720	1724	Right-handed 310
Helix 25	AC7	C	1726	1740	Right-handed alpha
Helix 26	AC8	D	58	61	Right-handed 310
Helix 27	AC9	E	266	286	Right-handed alpha
Helix 28	AD1	E	310	314	Right-handed 310
Helix 29	AD2	E	315	326	Right-handed alpha
Helix 30	AD3	E	327	332	Right-handed 310
Helix 31	AD4	E	338	358	Right-handed alpha
Helix 32	AD5	E	361	366	Right-handed alpha
Helix 33	AD6	E	384	396	Right-handed alpha
Helix 34	AD7	E	399	404	Right-handed 310
Helix 35	AD8	E	419	427	Right-handed alpha
Helix 36	AD9	E	441	451	Right-handed alpha
Helix 37	AE1	E	473	478	Right-handed alpha
Helix 38	AE2	E	505	509	Right-handed 310
Helix 39	AE3	E	514	518	Right-handed 310
Helix 40	AE4	E	549	553	Right-handed 310
Helix 41	AE5	E	585	592	Right-handed alpha
Helix 42	AE6	E	599	608	Right-handed alpha
Helix 43	AE7	E	631	640	Right-handed alpha
Helix 44	AE8	E	641	645	Right-handed 310
Helix 45	AE9	E	675	679	Right-handed 310
Helix 46	AF1	E	735	744	Right-handed alpha

There are 33 sheets in PDB entry 9QPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	87	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	652	655	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	127	135	parallel
Strand 3	A	107	113	anti-parallel
Strand 4	A	55	59	anti-parallel
Strand 5	A	72	73	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	155	163	anti-parallel
Strand 3	A	197	203	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	232	233	parallel
Strand 3	A	211	212	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	192	first strand
Strand 2	A	173	179	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	227	229	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	247	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	309	314	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	362	363	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	279	287	anti-parallel
Strand 3	A	301	304	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	279	287	anti-parallel
Strand 3	A	337	342	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	430	432	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	424	first strand
Strand 2	A	402	410	anti-parallel
Strand 3	A	443	450	anti-parallel
Strand 4	A	456	463	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	476	first strand
Strand 2	A	488	495	anti-parallel
Strand 3	A	527	532	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	522	first strand
Strand 2	A	504	511	anti-parallel
Strand 3	A	540	549	anti-parallel
Strand 4	A	552	557	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	522	first strand
Strand 2	A	504	511	anti-parallel
Strand 3	A	540	549	anti-parallel
Strand 4	A	560	561	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	574	first strand
Strand 2	A	586	592	anti-parallel
Strand 3	B	795	798	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	789	first strand
Strand 2	A	597	604	anti-parallel
Strand 3	B	811	814	anti-parallel
Strand 4	B	819	821	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	789	first strand
Strand 2	A	597	604	anti-parallel
Strand 3	B	805	809	anti-parallel
Strand 4	B	825	828	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	774	775	first strand
Strand 2	B	925	932	parallel
Strand 3	B	908	916	anti-parallel
Strand 4	B	863	869	anti-parallel
Strand 5	B	885	889	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	836	first strand
Strand 2	B	854	857	anti-parallel
Strand 3	B	893	896	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	851	first strand
Strand 2	B	899	900	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	876	first strand
Strand 2	B	902	903	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	938	948	first strand
Strand 2	B	1376	1386	anti-parallel
Strand 3	B	975	981	anti-parallel
Strand 4	B	1359	1360	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	959	960	first strand
Strand 2	B	1366	1368	anti-parallel
Strand 3	B	1329	1335	anti-parallel
Strand 4	B	1338	1344	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1397	1405	first strand
Strand 2	C	1466	1474	anti-parallel
Strand 3	C	1536	1542	anti-parallel
Strand 4	C	1494	1496	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1512	1518	first strand
Strand 2	C	1521	1526	anti-parallel
Strand 3	C	1484	1486	anti-parallel
Strand 4	C	1552	1558	anti-parallel
Strand 5	C	1561	1570	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1701	1702	first strand
Strand 2	C	1664	1670	parallel
Strand 3	C	1640	1652	anti-parallel
Strand 4	C	1625	1637	anti-parallel
Strand 5	C	1682	1687	anti-parallel
Strand 6	C	1708	1711	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	74	78	anti-parallel
Strand 4	D	65	68	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	42	47	anti-parallel
Strand 3	D	31	35	anti-parallel
Strand 4	D	88	93	anti-parallel
Strand 5	D	114	116	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	246	first strand
Strand 2	E	453	454	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	302	304	first strand
Strand 2	E	291	298	anti-parallel
Strand 3	E	253	260	parallel
Strand 4	E	368	374	parallel
Strand 5	E	406	413	parallel
Strand 6	E	436	439	parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	533	first strand
Strand 2	E	519	524	anti-parallel
Strand 3	E	481	485	anti-parallel
Strand 4	E	492	496	anti-parallel
Strand 5	E	501	504	anti-parallel
Strand 6	E	563	567	anti-parallel
Strand 7	E	535	540	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	612	618	first strand
Strand 2	E	624	630	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	682	687	first strand
Strand 2	E	690	700	anti-parallel
Strand 3	E	727	731	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QPY