Analysis of interatomic Contacts of Structural Units in PDB entry:
9QQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QQW entry

There are 2 chains in PDB entry 9QQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 210
B
 LYS 3ASP 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9QQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
88 98Right-handed alpha
Helix 5
AA5
A
105 110Right-handed 310
Helix 6
AA6
A
111 149Right-handed alpha
Helix 7
AA7
A
154 179Right-handed alpha
Helix 8
AA8
A
183 210Right-handed alpha
Helix 9
AA9
B
12 25Right-handed alpha
Helix 10
AB1
B
37 48Right-handed alpha
Helix 11
AB2
B
64 75Right-handed alpha
Helix 12
AB3
B
88 98Right-handed alpha
Helix 13
AB4
B
107 109Right-handed 310
Helix 14
AB5
B
111 179Right-handed alpha
Helix 15
AB6
B
183 210Right-handed alpha
Helix 16
AB7
B
223 242Right-handed alpha
Helix 17
AB8
B
261 283Right-handed alpha
Helix 18
AB9
B
319 324Right-handed alpha
Helix 19
AC1
B
335 339Right-handed 310
Helix 20
AC2
B
342 354Right-handed alpha
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There are 8 sheets in PDB entry 9QQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
5 9parallel
Strand 3
A
52 55parallel
Strand 4
A
80 82parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
62 63anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
31 35parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
80 84parallel
Strand 3
B
103 105parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
62 63anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 222first strand
Strand 2
B
257 259anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
291 292parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 309first strand
Strand 2
B
371 375anti-parallel
Strand 3
B
357 359anti-parallel
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