Analysis of interatomic Contacts of Structural Units in PDB entry:
9QR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QR2 entry

There are 2 chains in PDB entry 9QR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 378
B
 LYS 3ASP 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 9QR2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
63 75Right-handed alpha
Helix 4
AA4
A
88 99Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
111 150Right-handed alpha
Helix 7
AA7
A
154 159Right-handed alpha
Helix 8
AA8
A
159 178Right-handed alpha
Helix 9
AA9
A
183 213Right-handed alpha
Helix 10
AB1
A
224 243Right-handed alpha
Helix 11
AB2
A
260 283Right-handed alpha
Helix 12
AB3
A
319 323Right-handed 310
Helix 13
AB4
A
324 328Right-handed 310
Helix 14
AB5
A
342 354Right-handed alpha
Helix 15
AB6
B
12 27Right-handed alpha
Helix 16
AB7
B
37 48Right-handed alpha
Helix 17
AB8
B
63 75Right-handed alpha
Helix 18
AB9
B
88 99Right-handed alpha
Helix 19
AC1
B
108 110Right-handed 310
Helix 20
AC2
B
111 153Right-handed alpha
Helix 21
AC3
B
154 164Right-handed alpha
Helix 22
AC4
B
166 178Right-handed alpha
Helix 23
AC5
B
183 213Right-handed alpha
Helix 24
AC6
B
224 242Right-handed alpha
Helix 25
AC7
B
260 283Right-handed alpha
Helix 26
AC8
B
319 326Right-handed 310
Helix 27
AC9
B
342 354Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9QR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
6 9parallel
Strand 3
A
52 55parallel
Strand 4
A
81 83parallel
Strand 5
A
102 104parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
256 259anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
291 301parallel
Strand 3
A
304 313anti-parallel
Strand 4
A
367 375anti-parallel
Strand 5
A
357 363anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
6 9parallel
Strand 3
B
52 55parallel
Strand 4
B
81 83parallel
Strand 5
B
102 104parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 223first strand
Strand 2
B
256 259anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
291 301parallel
Strand 3
B
304 313anti-parallel
Strand 4
B
367 375anti-parallel
Strand 5
B
357 363anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il