Analysis of interatomic Contacts of Structural Units in PDB entry:
9QRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QRN entry

There are 2 chains in PDB entry 9QRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 249ASP 1439
E
 T 1 A 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9QRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
357 369Right-handed alpha
Helix 2
AA2
A
383 395Right-handed alpha
Helix 3
AA3
A
472 479Right-handed alpha
Helix 4
AA4
A
491 503Right-handed alpha
Helix 5
AA5
A
512 527Right-handed alpha
Helix 6
AA6
A
539 547Right-handed alpha
Helix 7
AA7
A
554 562Right-handed alpha
Helix 8
AA8
A
571 593Right-handed alpha
Helix 9
AA9
A
599 604Right-handed 310
Helix 10
AB1
A
610 615Right-handed alpha
Helix 11
AB2
A
626 643Right-handed alpha
Helix 12
AB3
A
653 659Right-handed alpha
Helix 13
AB4
A
672 681Right-handed alpha
Helix 14
AB5
A
682 690Right-handed alpha
Helix 15
AB6
A
691 693Right-handed 310
Helix 16
AB7
A
704 710Right-handed alpha
Helix 17
AB8
A
715 733Right-handed alpha
Helix 18
AB9
A
750 759Right-handed alpha
Helix 19
AC1
A
760 770Right-handed 310
Helix 20
AC2
A
779 788Right-handed alpha
Helix 21
AC3
A
794 800Right-handed alpha
Helix 22
AC4
A
800 810Right-handed alpha
Helix 23
AC5
A
827 845Right-handed alpha
Helix 24
AC6
A
849 866Right-handed alpha
Helix 25
AC7
A
868 886Right-handed alpha
Helix 26
AC8
A
894 897Right-handed 310
Helix 27
AC9
A
898 904Right-handed alpha
Helix 28
AD1
A
934 938Right-handed 310
Helix 29
AD2
A
959 964Right-handed alpha
Helix 30
AD3
A
965 968Right-handed 310
Helix 31
AD4
A
981 994Right-handed alpha
Helix 32
AD5
A
1008 1023Right-handed alpha
Helix 33
AD6
A
1028 1037Right-handed alpha
Helix 34
AD7
A
1061 1065Right-handed 310
Helix 35
AD8
A
1070 1074Right-handed 310
Helix 36
AD9
A
1085 1090Right-handed alpha
Helix 37
AE1
A
1102 1115Right-handed alpha
Helix 38
AE2
A
1127 1134Right-handed alpha
Helix 39
AE3
A
1141 1146Right-handed alpha
Helix 40
AE4
A
1159 1170Right-handed alpha
Helix 41
AE5
A
1173 1185Right-handed alpha
Helix 42
AE6
A
1195 1200Right-handed alpha
Helix 43
AE7
A
1211 1222Right-handed alpha
Helix 44
AE8
A
1225 1238Right-handed alpha
Helix 45
AE9
A
1245 1259Right-handed alpha
Helix 46
AF1
A
1262 1271Right-handed alpha
Helix 47
AF2
A
1277 1298Right-handed alpha
Helix 48
AF3
A
1298 1311Right-handed alpha
Helix 49
AF4
A
1315 1322Right-handed alpha
Helix 50
AF5
A
1322 1336Right-handed alpha
Helix 51
AF6
A
1341 1360Right-handed alpha
Helix 52
AF7
A
1387 1391Right-handed 310
Helix 53
AF8
A
1396 1405Right-handed alpha
Helix 54
AF9
A
1414 1422Right-handed alpha
Helix 55
AG1
A
1425 1435Right-handed alpha
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There are 9 sheets in PDB entry 9QRN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
275 276anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 378first strand
Strand 2
A
397 407parallel
Strand 3
A
650 652parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 378first strand
Strand 2
A
397 407parallel
Strand 3
A
618 624anti-parallel
Strand 4
A
663 666anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 464first strand
Strand 2
A
444 453anti-parallel
Strand 3
A
426 434anti-parallel
Strand 4
A
507 510parallel
Strand 5
A
536 538parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 698first strand
Strand 2
A
736 739parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 892first strand
Strand 2
A
974 978anti-parallel
Strand 3
A
1094 1101parallel
Strand 4
A
1043 1055anti-parallel
Strand 5
A
998 1006anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
924 926first strand
Strand 2
A
915 917anti-parallel
Strand 3
A
951 953anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1068 1069first strand
Strand 2
A
1081 1082anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1363 1364first strand
Strand 2
A
1383 1385parallel
Strand 3
A
1378 1380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il