Analysis of interatomic Contacts of Structural Units in PDB entry:
9QSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QSW entry

There is 1 chain in PDB entry 9QSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5VAL 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9QSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
44 57Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
87 92Right-handed 310
Helix 6
AA6
A
93 105Right-handed alpha
Helix 7
AA7
A
127 146Right-handed alpha
Helix 8
AA8
A
158 162Right-handed alpha
Helix 9
AA9
A
192 205Right-handed alpha
Helix 10
AB1
A
206 210Right-handed 310
Helix 11
AB2
A
218 220Right-handed 310
Helix 12
AB3
A
225 237Right-handed alpha
Helix 13
AB4
A
246 254Right-handed alpha
Helix 14
AB5
A
258 273Right-handed alpha
Helix 15
AB6
A
290 294Right-handed alpha
Helix 16
AB7
A
301 307Right-handed alpha
Helix 17
AB8
A
308 310Right-handed 310
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There are 4 sheets in PDB entry 9QSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
33 37parallel
Strand 3
A
9 12parallel
Strand 4
A
81 84parallel
Strand 5
A
109 111parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
212 215parallel
Strand 3
A
287 289parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
187 191parallel
Strand 3
A
222 224anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
241 245parallel
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