Analysis of interatomic Contacts of Structural Units in PDB entry:
9QTB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QTB entry

There is 1 chain in PDB entry 9QTB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 214VAL 1626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 9QTB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 228Right-handed alpha
Helix 2
AA2
A
231 239Right-handed alpha
Helix 3
AA3
A
243 253Right-handed alpha
Helix 4
AA4
A
256 280Right-handed alpha
Helix 5
AA5
A
286 311Right-handed alpha
Helix 6
AA6
A
341 345Right-handed 310
Helix 7
AA7
A
353 369Right-handed alpha
Helix 8
AA8
A
428 434Right-handed alpha
Helix 9
AA9
A
435 437Right-handed 310
Helix 10
AB1
A
447 455Right-handed alpha
Helix 11
AB2
A
459 463Right-handed 310
Helix 12
AB3
A
475 487Right-handed alpha
Helix 13
AB4
A
487 494Right-handed alpha
Helix 14
AB5
A
496 507Right-handed alpha
Helix 15
AB6
A
508 529Right-handed alpha
Helix 16
AB7
A
601 608Right-handed alpha
Helix 17
AB8
A
608 624Right-handed alpha
Helix 18
AB9
A
631 637Right-handed alpha
Helix 19
AC1
A
640 660Right-handed alpha
Helix 20
AC2
A
661 677Right-handed alpha
Helix 21
AC3
A
678 680Right-handed 310
Helix 22
AC4
A
687 695Right-handed 310
Helix 23
AC5
A
701 721Right-handed alpha
Helix 24
AC6
A
748 757Right-handed alpha
Helix 25
AC7
A
758 760Right-handed 310
Helix 26
AC8
A
773 782Right-handed alpha
Helix 27
AC9
A
783 787Right-handed 310
Helix 28
AD1
A
808 828Right-handed alpha
Helix 29
AD2
A
830 845Right-handed alpha
Helix 30
AD3
A
847 852Right-handed alpha
Helix 31
AD4
A
861 865Right-handed 310
Helix 32
AD5
A
879 890Right-handed alpha
Helix 33
AD6
A
894 897Right-handed 310
Helix 34
AD7
A
898 910Right-handed alpha
Helix 35
AD8
A
932 951Right-handed alpha
Helix 36
AD9
A
960 980Right-handed alpha
Helix 37
AE1
A
1001 1011Right-handed alpha
Helix 38
AE2
A
1012 1015Right-handed 310
Helix 39
AE3
A
1016 1026Right-handed alpha
Helix 40
AE4
A
1035 1044Right-handed alpha
Helix 41
AE5
A
1052 1063Right-handed alpha
Helix 42
AE6
A
1090 1116Right-handed alpha
Helix 43
AE7
A
1117 1124Right-handed 310
Helix 44
AE8
A
1145 1167Right-handed alpha
Helix 45
AE9
A
1168 1171Right-handed 310
Helix 46
AF1
A
1202 1209Right-handed alpha
Helix 47
AF2
A
1217 1235Right-handed alpha
Helix 48
AF3
A
1238 1257Right-handed alpha
Helix 49
AF4
A
1264 1276Right-handed alpha
Helix 50
AF5
A
1277 1281Right-handed 310
Helix 51
AF6
A
1287 1291Right-handed 310
Helix 52
AF7
A
1294 1307Right-handed alpha
Helix 53
AF8
A
1308 1318Right-handed alpha
Helix 54
AF9
A
1375 1381Right-handed alpha
Helix 55
AG1
A
1382 1387Right-handed 310
Helix 56
AG2
A
1391 1404Right-handed alpha
Helix 57
AG3
A
1452 1459Right-handed alpha
Helix 58
AG4
A
1460 1462Right-handed 310
Helix 59
AG5
A
1469 1477Right-handed alpha
Helix 60
AG6
A
1479 1491Right-handed alpha
Helix 61
AG7
A
1524 1535Right-handed alpha
Helix 62
AG8
A
1542 1557Right-handed alpha
Helix 63
AG9
A
1563 1571Right-handed alpha
Helix 64
AH1
A
1609 1616Right-handed alpha
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There are 9 sheets in PDB entry 9QTB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
571 574anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
547 553anti-parallel
Strand 3
A
559 567anti-parallel
Strand 4
A
590 592anti-parallel
Strand 5
A
585 586anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
547 553anti-parallel
Strand 3
A
559 567anti-parallel
Strand 4
A
596 599anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
733 735anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
927 930first strand
Strand 2
A
912 918anti-parallel
Strand 3
A
1030 1033parallel
Strand 4
A
1077 1080anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1130first strand
Strand 2
A
1135 1142anti-parallel
Strand 3
A
983 990anti-parallel
Strand 4
A
1179 1183anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1185 1188first strand
Strand 2
A
1191 1194anti-parallel
Strand 3
A
1197 1199anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1498 1500first strand
Strand 2
A
1621 1623anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1508 1513first strand
Strand 2
A
1593 1597anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il