Analysis of interatomic Contacts of Structural Units in PDB entry:
9QTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QTP entry

There are 4 chains in PDB entry 9QTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 MET 1ASP 27
P
 HIS 7PRO 17
o
 MET 1THR 316
p
 MET 1THR 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9QTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
o
50 69Right-handed alpha
Helix 2
AA2
o
80 95Right-handed alpha
Helix 3
AA3
o
106 120Right-handed alpha
Helix 4
AA4
o
136 146Right-handed alpha
Helix 5
AA5
o
162 172Right-handed alpha
Helix 6
AA6
o
180 188Right-handed alpha
Helix 7
AA7
o
205 213Right-handed alpha
Helix 8
AA8
o
228 234Right-handed alpha
Helix 9
AA9
o
235 245Right-handed alpha
Helix 10
AB1
o
247 257Right-handed alpha
Helix 11
AB2
o
258 266Right-handed alpha
Helix 12
AB3
o
275 277Right-handed 310
Helix 13
AB4
o
278 301Right-handed alpha
Helix 14
AB5
o
310 315Right-handed alpha
Helix 15
AB6
p
52 69Right-handed alpha
Helix 16
AB7
p
80 95Right-handed alpha
Helix 17
AB8
p
106 121Right-handed alpha
Helix 18
AB9
p
136 146Right-handed alpha
Helix 19
AC1
p
162 172Right-handed alpha
Helix 20
AC2
p
180 185Right-handed alpha
Helix 21
AC3
p
186 189Right-handed 310
Helix 22
AC4
p
205 212Right-handed alpha
Helix 23
AC5
p
212 221Right-handed alpha
Helix 24
AC6
p
228 234Right-handed alpha
Helix 25
AC7
p
235 243Right-handed alpha
Helix 26
AC8
p
247 266Right-handed alpha
Helix 27
AC9
p
278 301Right-handed alpha
Helix 28
AD1
p
306 309Right-handed 310
Helix 29
AD2
p
310 315Right-handed alpha
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There are 6 sheets in PDB entry 9QTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
12 14anti-parallel
Strand 3
E
20 23anti-parallel
Strand 4
o
3 4parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
10 13first strand
Strand 2
o
16 19anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
28 30first strand
Strand 2
o
72 75parallel
Strand 3
o
100 103parallel
Strand 4
o
126 131parallel
Strand 5
o
150 154parallel
Strand 6
o
192 196parallel
Strand 7
o
224 226parallel
Strand 8
o
270 272parallel
Strand 9
o
28 30parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
o
41 43first strand
Strand 2
o
48 49anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
p
11 13first strand
Strand 2
p
16 18anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
p
100 103first strand
Strand 2
p
72 77parallel
Strand 3
p
28 33parallel
Strand 4
p
270 275parallel
Strand 5
p
224 226parallel
Strand 6
p
192 196parallel
Strand 7
p
150 154parallel
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