Analysis of interatomic Contacts of Structural Units in PDB entry:
9QU9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QU9 entry

There are 8 chains in PDB entry 9QU9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	VAL 20	ILE 93
Q	GLY 19	PRO 94
R	LEU 21	PRO 94
S	LEU 21	ILE 93
A	TRP 11	LEU 992
B	PRO 8	LEU 992
C	TRP 11	LEU 992
D	PRO 8	LEU 992

There are131 helices in PDB entry 9QU9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	35	47	Right-handed alpha
Helix 2	AA2	P	70	76	Right-handed alpha
Helix 3	AA3	Q	33	49	Right-handed alpha
Helix 4	AA4	Q	70	76	Right-handed alpha
Helix 5	AA5	R	34	45	Right-handed alpha
Helix 6	AA6	R	70	76	Right-handed alpha
Helix 7	AA7	S	35	40	Right-handed alpha
Helix 8	AA8	S	42	47	Right-handed alpha
Helix 9	AA9	S	70	76	Right-handed alpha
Helix 10	AB1	A	20	25	Right-handed alpha
Helix 11	AB2	A	27	40	Right-handed alpha
Helix 12	AB3	A	55	65	Right-handed alpha
Helix 13	AB4	A	76	79	Right-handed 310
Helix 14	AB5	A	80	97	Right-handed alpha
Helix 15	AB6	A	109	115	Right-handed alpha
Helix 16	AB7	A	120	128	Right-handed alpha
Helix 17	AB8	A	132	148	Right-handed alpha
Helix 18	AB9	A	155	157	Right-handed 310
Helix 19	AC1	A	159	177	Right-handed alpha
Helix 20	AC2	A	188	201	Right-handed alpha
Helix 21	AC3	A	219	232	Right-handed alpha
Helix 22	AC4	A	245	250	Right-handed alpha
Helix 23	AC5	A	254	271	Right-handed alpha
Helix 24	AC6	A	281	288	Right-handed alpha
Helix 25	AC7	A	301	309	Right-handed alpha
Helix 26	AC8	A	326	333	Right-handed alpha
Helix 27	AC9	A	345	358	Right-handed alpha
Helix 28	AD1	A	367	379	Right-handed alpha
Helix 29	AD2	A	381	392	Right-handed alpha
Helix 30	AD3	A	396	410	Right-handed alpha
Helix 31	AD4	A	414	424	Right-handed alpha
Helix 32	AD5	A	426	439	Right-handed alpha
Helix 33	AD6	A	444	452	Right-handed alpha
Helix 34	AD7	A	458	469	Right-handed alpha
Helix 35	AD8	A	485	499	Right-handed alpha
Helix 36	AD9	A	499	505	Right-handed alpha
Helix 37	AE1	A	509	520	Right-handed alpha
Helix 38	AE2	A	642	646	Right-handed 310
Helix 39	AE3	A	664	670	Right-handed 310
Helix 40	AE4	A	776	783	Right-handed alpha
Helix 41	AE5	A	841	851	Right-handed alpha
Helix 42	AE6	B	20	25	Right-handed alpha
Helix 43	AE7	B	27	40	Right-handed alpha
Helix 44	AE8	B	76	78	Right-handed 310
Helix 45	AE9	B	80	96	Right-handed alpha
Helix 46	AF1	B	109	115	Right-handed alpha
Helix 47	AF2	B	117	130	Right-handed alpha
Helix 48	AF3	B	132	149	Right-handed alpha
Helix 49	AF4	B	159	175	Right-handed alpha
Helix 50	AF5	B	188	201	Right-handed alpha
Helix 51	AF6	B	219	232	Right-handed alpha
Helix 52	AF7	B	245	250	Right-handed alpha
Helix 53	AF8	B	254	271	Right-handed alpha
Helix 54	AF9	B	281	287	Right-handed alpha
Helix 55	AG1	B	288	290	Right-handed 310
Helix 56	AG2	B	301	309	Right-handed alpha
Helix 57	AG3	B	326	333	Right-handed alpha
Helix 58	AG4	B	345	358	Right-handed alpha
Helix 59	AG5	B	367	379	Right-handed alpha
Helix 60	AG6	B	381	392	Right-handed alpha
Helix 61	AG7	B	396	410	Right-handed alpha
Helix 62	AG8	B	414	424	Right-handed alpha
Helix 63	AG9	B	426	440	Right-handed alpha
Helix 64	AH1	B	444	452	Right-handed alpha
Helix 65	AH2	B	458	469	Right-handed alpha
Helix 66	AH3	B	485	499	Right-handed alpha
Helix 67	AH4	B	499	504	Right-handed alpha
Helix 68	AH5	B	509	520	Right-handed alpha
Helix 69	AH6	B	664	670	Right-handed 310
Helix 70	AH7	B	776	782	Right-handed alpha
Helix 71	AH8	B	841	851	Right-handed alpha
Helix 72	AH9	C	20	25	Right-handed alpha
Helix 73	AI1	C	27	40	Right-handed alpha
Helix 74	AI2	C	55	65	Right-handed alpha
Helix 75	AI3	C	76	79	Right-handed 310
Helix 76	AI4	C	80	98	Right-handed alpha
Helix 77	AI5	C	109	115	Right-handed alpha
Helix 78	AI6	C	120	128	Right-handed alpha
Helix 79	AI7	C	132	149	Right-handed alpha
Helix 80	AI8	C	155	157	Right-handed 310
Helix 81	AI9	C	159	177	Right-handed alpha
Helix 82	AJ1	C	188	201	Right-handed alpha
Helix 83	AJ2	C	219	232	Right-handed alpha
Helix 84	AJ3	C	245	250	Right-handed alpha
Helix 85	AJ4	C	254	271	Right-handed alpha
Helix 86	AJ5	C	281	288	Right-handed alpha
Helix 87	AJ6	C	301	309	Right-handed alpha
Helix 88	AJ7	C	326	334	Right-handed alpha
Helix 89	AJ8	C	345	358	Right-handed alpha
Helix 90	AJ9	C	367	379	Right-handed alpha
Helix 91	AK1	C	381	392	Right-handed alpha
Helix 92	AK2	C	396	410	Right-handed alpha
Helix 93	AK3	C	414	424	Right-handed alpha
Helix 94	AK4	C	426	439	Right-handed alpha
Helix 95	AK5	C	444	452	Right-handed alpha
Helix 96	AK6	C	458	469	Right-handed alpha
Helix 97	AK7	C	485	499	Right-handed alpha
Helix 98	AK8	C	499	505	Right-handed alpha
Helix 99	AK9	C	509	519	Right-handed alpha
Helix 100	AL1	C	642	646	Right-handed 310
Helix 101	AL2	C	664	670	Right-handed 310
Helix 102	AL3	C	747	751	Right-handed 310
Helix 103	AL4	C	841	851	Right-handed alpha
Helix 104	AL5	D	27	40	Right-handed alpha
Helix 105	AL6	D	56	63	Right-handed alpha
Helix 106	AL7	D	80	97	Right-handed alpha
Helix 107	AL8	D	109	115	Right-handed alpha
Helix 108	AL9	D	117	130	Right-handed alpha
Helix 109	AM1	D	132	149	Right-handed alpha
Helix 110	AM2	D	159	175	Right-handed alpha
Helix 111	AM3	D	188	201	Right-handed alpha
Helix 112	AM4	D	219	232	Right-handed alpha
Helix 113	AM5	D	245	250	Right-handed alpha
Helix 114	AM6	D	254	271	Right-handed alpha
Helix 115	AM7	D	281	287	Right-handed alpha
Helix 116	AM8	D	301	309	Right-handed alpha
Helix 117	AM9	D	326	333	Right-handed alpha
Helix 118	AN1	D	345	358	Right-handed alpha
Helix 119	AN2	D	367	379	Right-handed alpha
Helix 120	AN3	D	381	392	Right-handed alpha
Helix 121	AN4	D	396	410	Right-handed alpha
Helix 122	AN5	D	414	424	Right-handed alpha
Helix 123	AN6	D	426	439	Right-handed alpha
Helix 124	AN7	D	444	452	Right-handed alpha
Helix 125	AN8	D	458	469	Right-handed alpha
Helix 126	AN9	D	485	499	Right-handed alpha
Helix 127	AO1	D	499	504	Right-handed alpha
Helix 128	AO2	D	509	520	Right-handed alpha
Helix 129	AO3	D	664	670	Right-handed 310
Helix 130	AO4	D	776	782	Right-handed alpha
Helix 131	AO5	D	841	851	Right-handed alpha

There are 28 sheets in PDB entry 9QU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	24	29	first strand
Strand 2	P	62	68	anti-parallel
Strand 3	P	52	58	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	27	29	first strand
Strand 2	Q	62	68	anti-parallel
Strand 3	Q	52	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	52	58	first strand
Strand 2	R	62	69	anti-parallel
Strand 3	R	22	29	anti-parallel
Strand 4	R	92	93	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	25	29	first strand
Strand 2	S	62	68	anti-parallel
Strand 3	S	52	53	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	A	66	73	parallel
Strand 3	A	100	105	parallel
Strand 4	A	151	153	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	292	299	parallel
Strand 3	A	319	324	parallel
Strand 4	A	208	213	parallel
Strand 5	A	337	340	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	475	first strand
Strand 2	A	481	483	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	528	532	parallel
Strand 3	A	554	558	parallel
Strand 4	A	583	586	parallel
Strand 5	A	605	607	parallel
Strand 6	A	628	630	parallel
Strand 7	A	651	653	parallel
Strand 8	A	675	677	parallel
Strand 9	A	698	702	parallel
Strand 10	A	719	723	parallel
Strand 11	A	742	746	parallel
Strand 12	A	764	766	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	800	first strand
Strand 2	A	820	821	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	859	first strand
Strand 2	A	946	950	anti-parallel
Strand 3	A	893	894	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	912	915	first strand
Strand 2	A	918	924	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	68	74	parallel
Strand 3	B	100	106	parallel
Strand 4	B	151	153	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	292	299	parallel
Strand 3	B	319	324	parallel
Strand 4	B	208	213	parallel
Strand 5	B	337	340	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	481	484	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	532	first strand
Strand 2	B	554	558	parallel
Strand 3	B	583	586	parallel
Strand 4	B	605	607	parallel
Strand 5	B	628	630	parallel
Strand 6	B	651	653	parallel
Strand 7	B	675	679	parallel
Strand 8	B	698	705	parallel
Strand 9	B	719	725	parallel
Strand 10	B	743	744	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	16	first strand
Strand 2	C	66	73	parallel
Strand 3	C	100	105	parallel
Strand 4	C	151	153	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	292	296	parallel
Strand 3	C	319	324	parallel
Strand 4	C	208	213	parallel
Strand 5	C	337	340	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	475	first strand
Strand 2	C	481	484	anti-parallel

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There are 11 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	507	first strand
Strand 2	C	528	532	parallel
Strand 3	C	554	558	parallel
Strand 4	C	583	586	parallel
Strand 5	C	605	607	parallel
Strand 6	C	628	630	parallel
Strand 7	C	651	653	parallel
Strand 8	C	675	679	parallel
Strand 9	C	698	702	parallel
Strand 10	C	719	722	parallel
Strand 11	C	742	745	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	831	833	first strand
Strand 2	C	857	859	parallel
Strand 3	C	946	950	anti-parallel
Strand 4	C	889	896	anti-parallel
Strand 5	C	982	983	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	831	833	first strand
Strand 2	C	857	859	parallel
Strand 3	C	946	950	anti-parallel
Strand 4	C	889	896	anti-parallel
Strand 5	C	987	990	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	910	913	first strand
Strand 2	C	973	976	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	D	68	73	parallel
Strand 3	D	100	105	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	292	299	parallel
Strand 3	D	319	324	parallel
Strand 4	D	208	213	parallel
Strand 5	D	338	340	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	475	first strand
Strand 2	D	481	484	anti-parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	554	558	parallel
Strand 3	D	583	586	parallel
Strand 4	D	605	607	parallel
Strand 5	D	628	630	parallel
Strand 6	D	651	653	parallel
Strand 7	D	675	679	parallel
Strand 8	D	698	702	parallel
Strand 9	D	719	722	parallel
Strand 10	D	743	745	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	858	860	first strand
Strand 2	D	947	949	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	871	873	first strand
Strand 2	D	987	989	anti-parallel
Strand 3	D	891	892	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QU9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QU9