Analysis of interatomic Contacts of Structural Units in PDB entry:
9QUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QUF entry

There is 1 chain in PDB entry 9QUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6VAL 867
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9QUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 36Right-handed 310
Helix 2
AA2
A
55 66Right-handed alpha
Helix 3
AA3
A
131 135Right-handed 310
Helix 4
AA4
A
137 145Right-handed alpha
Helix 5
AA5
A
196 200Right-handed 310
Helix 6
AA6
A
219 225Right-handed alpha
Helix 7
AA7
A
264 271Right-handed 310
Helix 8
AA8
A
277 282Right-handed alpha
Helix 9
AA9
A
325 333Right-handed alpha
Helix 10
AB1
A
352 356Right-handed 310
Helix 11
AB2
A
388 390Right-handed 310
Helix 12
AB3
A
622 639Right-handed alpha
Helix 13
AB4
A
714 718Right-handed 310
Helix 14
AB5
A
735 747Right-handed alpha
Helix 15
AB6
A
751 756Right-handed 310
Helix 16
AB7
A
765 792Right-handed alpha
Helix 17
AB8
A
797 807Right-handed alpha
Helix 18
AB9
A
815 833Right-handed alpha
Helix 19
AC1
A
847 866Right-handed alpha
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There are 8 sheets in PDB entry 9QUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
82 87parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
24 28anti-parallel
Strand 5
A
12 16anti-parallel
Strand 6
A
91 96anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
114 127anti-parallel
Strand 3
A
364 377anti-parallel
Strand 4
A
382 386anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
364 377anti-parallel
Strand 4
A
114 127anti-parallel
Strand 5
A
103 105anti-parallel
Strand 6
A
391 392anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
215 217anti-parallel
Strand 3
A
240 258anti-parallel
Strand 4
A
171 185anti-parallel
Strand 5
A
191 193anti-parallel
Strand 6
A
227 228anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
215 217anti-parallel
Strand 3
A
240 258anti-parallel
Strand 4
A
171 185anti-parallel
Strand 5
A
165 168anti-parallel
Strand 6
A
286 288anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 476first strand
Strand 2
A
441 447anti-parallel
Strand 3
A
429 436anti-parallel
Strand 4
A
407 410anti-parallel
Strand 5
A
480 481anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
525 529anti-parallel
Strand 3
A
514 520anti-parallel
Strand 4
A
493 496anti-parallel
Strand 5
A
546 550anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 604first strand
Strand 2
A
644 649parallel
Strand 3
A
655 661anti-parallel
Strand 4
A
672 678anti-parallel
Strand 5
A
689 692anti-parallel
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