Analysis of interatomic Contacts of Structural Units in PDB entry:
9QUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QUP entry

There are 2 chains in PDB entry 9QUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 168
B
 MET 0SER 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9QUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
64 82Right-handed alpha
Helix 4
AA4
A
103 122Right-handed alpha
Helix 5
AA5
A
132 147Right-handed alpha
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
B
9 24Right-handed alpha
Helix 8
AA8
B
34 44Right-handed alpha
Helix 9
AA9
B
64 82Right-handed alpha
Helix 10
AB1
B
103 121Right-handed alpha
Helix 11
AB2
B
132 147Right-handed alpha
Helix 12
AB3
B
157 168Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9QUP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
27 32parallel
Strand 3
A
48 52parallel
Strand 4
A
150 155parallel
Strand 5
B
2 6parallel
Strand 6
B
27 32parallel
Strand 7
B
48 52parallel
Strand 8
B
150 155parallel
Strand 9
A
2 6parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
94 100anti-parallel
Strand 4
A
85 91anti-parallel
Strand 5
B
85 91anti-parallel
Strand 6
B
94 100anti-parallel
Strand 7
B
56 61anti-parallel
Strand 8
B
124 128anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il