Analysis of interatomic Contacts of Structural Units in PDB entry:
9QUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QUW entry

There are 6 chains in PDB entry 9QUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ASP 1	ALA 196
D	GLU 1	ARG 221
F	GLU 1	ARG 221
A	PRO 79	GLU 521
B	PRO 79	GLU 521
C	ASP 1	ALA 196

There are 56 helices in PDB entry 9QUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	79	83	Right-handed 310
Helix 2	AA2	E	121	128	Right-handed alpha
Helix 3	AA3	E	150	153	Right-handed 310
Helix 4	AA4	E	182	188	Right-handed alpha
Helix 5	AA5	D	28	32	Right-handed 310
Helix 6	AA6	D	62	65	Right-handed 310
Helix 7	AA7	D	87	91	Right-handed 310
Helix 8	AA8	D	165	169	Right-handed 310
Helix 9	AA9	F	28	32	Right-handed 310
Helix 10	AB1	F	62	65	Right-handed 310
Helix 11	AB2	F	87	91	Right-handed 310
Helix 12	AB3	F	165	169	Right-handed 310
Helix 13	AB4	A	82	106	Right-handed alpha
Helix 14	AB5	A	113	135	Right-handed alpha
Helix 15	AB6	A	144	159	Right-handed alpha
Helix 16	AB7	A	159	166	Right-handed alpha
Helix 17	AB8	A	169	192	Right-handed alpha
Helix 18	AB9	A	193	200	Right-handed alpha
Helix 19	AC1	A	201	226	Right-handed alpha
Helix 20	AC2	A	230	241	Right-handed alpha
Helix 21	AC3	A	245	260	Right-handed alpha
Helix 22	AC4	A	266	275	Right-handed alpha
Helix 23	AC5	A	277	295	Right-handed alpha
Helix 24	AC6	A	298	325	Right-handed alpha
Helix 25	AC7	A	334	357	Right-handed alpha
Helix 26	AC8	A	361	379	Right-handed alpha
Helix 27	AC9	A	381	408	Right-handed alpha
Helix 28	AD1	A	417	440	Right-handed alpha
Helix 29	AD2	A	446	456	Right-handed alpha
Helix 30	AD3	A	463	468	Right-handed alpha
Helix 31	AD4	A	469	479	Right-handed alpha
Helix 32	AD5	A	480	517	Right-handed alpha
Helix 33	AD6	B	82	106	Right-handed alpha
Helix 34	AD7	B	113	135	Right-handed alpha
Helix 35	AD8	B	144	159	Right-handed alpha
Helix 36	AD9	B	159	166	Right-handed alpha
Helix 37	AE1	B	169	192	Right-handed alpha
Helix 38	AE2	B	193	200	Right-handed alpha
Helix 39	AE3	B	201	226	Right-handed alpha
Helix 40	AE4	B	230	241	Right-handed alpha
Helix 41	AE5	B	245	260	Right-handed alpha
Helix 42	AE6	B	266	275	Right-handed alpha
Helix 43	AE7	B	277	295	Right-handed alpha
Helix 44	AE8	B	298	325	Right-handed alpha
Helix 45	AE9	B	334	357	Right-handed alpha
Helix 46	AF1	B	361	379	Right-handed alpha
Helix 47	AF2	B	381	408	Right-handed alpha
Helix 48	AF3	B	417	440	Right-handed alpha
Helix 49	AF4	B	446	456	Right-handed alpha
Helix 50	AF5	B	463	468	Right-handed alpha
Helix 51	AF6	B	469	479	Right-handed alpha
Helix 52	AF7	B	480	517	Right-handed alpha
Helix 53	AF8	C	79	83	Right-handed 310
Helix 54	AF9	C	121	128	Right-handed alpha
Helix 55	AG1	C	150	153	Right-handed 310
Helix 56	AG2	C	182	188	Right-handed alpha

There are 22 sheets in PDB entry 9QUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	66	67	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	35	38	anti-parallel
Strand 5	E	44	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	131	139	anti-parallel
Strand 3	E	173	180	anti-parallel
Strand 4	E	159	163	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	194	195	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	117	119	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	93	99	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	189	190	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	203	204	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	117	119	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	47	51	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	93	99	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	146	first strand
Strand 2	F	189	190	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	162	first strand
Strand 2	F	203	204	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	63	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	66	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	35	38	anti-parallel
Strand 5	C	44	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	131	139	anti-parallel
Strand 3	C	173	180	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QUW