Analysis of interatomic Contacts of Structural Units in PDB entry:
9QV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QV1 entry

There is 1 chain in PDB entry 9QV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PHE 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 9QV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 52Right-handed alpha
Helix 2
AA2
A
67 78Right-handed alpha
Helix 3
AA3
A
114 130Right-handed alpha
Helix 4
AA4
A
146 161Right-handed alpha
Helix 5
AA5
A
169 178Right-handed alpha
Helix 6
AA6
A
187 196Right-handed alpha
Helix 7
AA7
A
201 214Right-handed alpha
Helix 8
AA8
A
225 227Right-handed 310
Helix 9
AA9
A
252 267Right-handed alpha
Helix 10
AB1
A
270 287Right-handed alpha
Helix 11
AB2
A
295 306Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9QV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
55 63parallel
Strand 3
A
84 86parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
55 63parallel
Strand 3
A
4 9parallel
Strand 4
A
134 138parallel
Strand 5
A
164 167parallel
Strand 6
A
183 184parallel
Strand 7
A
219 223parallel
Strand 8
A
229 233anti-parallel
Strand 9
A
236 241anti-parallel
Strand 10
A
307 310anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
91 97parallel
Strand 4
A
103 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il