Analysis of interatomic Contacts of Structural Units in PDB entry:
9QVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QVF entry

There are 3 chains in PDB entry 9QVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 81	ILE 351
B	GLY 81	ILE 351
C	THR 56	ILE 351

There are 9 helices in PDB entry 9QVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	124	Right-handed alpha
Helix 2	AA2	A	165	172	Right-handed alpha
Helix 3	AA3	A	203	208	Right-handed alpha
Helix 4	AA4	B	118	124	Right-handed alpha
Helix 5	AA5	B	165	171	Right-handed alpha
Helix 6	AA6	B	203	208	Right-handed alpha
Helix 7	AA7	C	118	124	Right-handed alpha
Helix 8	AA8	C	165	170	Right-handed alpha
Helix 9	AA9	C	203	208	Right-handed alpha

There are 15 sheets in PDB entry 9QVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	94	first strand
Strand 2	A	226	241	anti-parallel
Strand 3	A	126	139	anti-parallel
Strand 4	A	184	187	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	94	first strand
Strand 2	A	226	241	anti-parallel
Strand 3	A	126	139	anti-parallel
Strand 4	A	195	196	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	108	first strand
Strand 2	A	210	217	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	176	178	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	258	first strand
Strand 2	A	249	252	anti-parallel
Strand 3	A	344	348	anti-parallel
Strand 4	A	288	292	anti-parallel
Strand 5	A	319	325	anti-parallel
Strand 6	A	307	311	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	269	first strand
Strand 2	A	274	280	anti-parallel
Strand 3	A	332	337	anti-parallel
Strand 4	A	301	302	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	94	first strand
Strand 2	B	226	238	anti-parallel
Strand 3	B	131	140	anti-parallel
Strand 4	B	184	188	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	149	155	anti-parallel
Strand 4	B	176	178	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	344	349	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	318	326	anti-parallel
Strand 5	B	284	285	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	344	349	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	318	326	anti-parallel
Strand 5	B	307	310	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	269	first strand
Strand 2	B	274	280	anti-parallel
Strand 3	B	333	336	anti-parallel
Strand 4	B	298	302	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	94	first strand
Strand 2	C	226	239	anti-parallel
Strand 3	C	131	140	anti-parallel
Strand 4	C	185	188	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	108	first strand
Strand 2	C	210	217	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	176	178	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	195	196	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	344	349	anti-parallel
Strand 3	C	287	292	anti-parallel
Strand 4	C	319	322	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	268	first strand
Strand 2	C	274	280	anti-parallel
Strand 3	C	332	337	anti-parallel
Strand 4	C	298	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QVF