Analysis of interatomic Contacts of Structural Units in PDB entry:
9QVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QVL entry

There is 1 chain in PDB entry 9QVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -3VAL 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 9QVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
27 34Right-handed alpha
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
60 72Right-handed alpha
Helix 5
AA5
A
84 97Right-handed alpha
Helix 6
AA6
A
106 108Right-handed 310
Helix 7
AA7
A
112 117Right-handed alpha
Helix 8
AA8
A
118 120Right-handed 310
Helix 9
AA9
A
155 162Right-handed alpha
Helix 10
AB1
A
187 202Right-handed alpha
Helix 11
AB2
A
203 217Right-handed alpha
Helix 12
AB3
A
224 234Right-handed alpha
Helix 13
AB4
A
234 252Right-handed alpha
Helix 14
AB5
A
258 280Right-handed alpha
Helix 15
AB6
A
283 308Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9QVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
99 104anti-parallel
Strand 4
A
127 135anti-parallel
Strand 5
A
139 144anti-parallel
Strand 6
A
149 154anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
169 170anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il