Analysis of interatomic Contacts of Structural Units in PDB entry:
9QVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QVV entry

There is 1 chain in PDB entry 9QVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 168PRO 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 9QVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
242 250Right-handed alpha
Helix 2
AA2
A
275 279Right-handed 310
Helix 3
AA3
A
367 377Right-handed alpha
Helix 4
AA4
A
489 498Right-handed alpha
Helix 5
AA5
A
527 532Right-handed alpha
Helix 6
AA6
A
615 624Right-handed alpha
Helix 7
AA7
A
650 654Right-handed 310
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There are 7 sheets in PDB entry 9QVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
184 192anti-parallel
Strand 3
A
195 203anti-parallel
Strand 4
A
233 239anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
255 259anti-parallel
Strand 4
A
268 271anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 352first strand
Strand 2
A
332 340anti-parallel
Strand 3
A
379 385anti-parallel
Strand 4
A
392 396anti-parallel
Strand 5
A
283 290anti-parallel
Strand 6
A
298 305anti-parallel
Strand 7
A
312 319anti-parallel
Strand 8
A
358 363anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 352first strand
Strand 2
A
332 340anti-parallel
Strand 3
A
379 385anti-parallel
Strand 4
A
392 396anti-parallel
Strand 5
A
283 290anti-parallel
Strand 6
A
398 399anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 470first strand
Strand 2
A
450 456anti-parallel
Strand 3
A
502 507anti-parallel
Strand 4
A
515 522anti-parallel
Strand 5
A
405 410anti-parallel
Strand 6
A
424 431anti-parallel
Strand 7
A
437 444anti-parallel
Strand 8
A
480 485anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 538first strand
Strand 2
A
552 559anti-parallel
Strand 3
A
565 572anti-parallel
Strand 4
A
606 611anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 599first strand
Strand 2
A
583 587anti-parallel
Strand 3
A
627 632anti-parallel
Strand 4
A
641 645anti-parallel
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