Analysis of interatomic Contacts of Structural Units in PDB entry:
9QW7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QW7 entry

There are 2 chains in PDB entry 9QW7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 376
B
 MET 1TYR 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9QW7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
95 100Right-handed alpha
Helix 4
AA4
A
143 160Right-handed alpha
Helix 5
AA5
A
162 174Right-handed alpha
Helix 6
AA6
A
216 227Right-handed alpha
Helix 7
AA7
A
239 254Right-handed alpha
Helix 8
AA8
A
286 304Right-handed alpha
Helix 9
AA9
A
313 331Right-handed alpha
Helix 10
AB1
A
331 341Right-handed alpha
Helix 11
AB2
A
343 356Right-handed alpha
Helix 12
AB3
A
358 365Right-handed alpha
Helix 13
AB4
A
366 376Right-handed alpha
Helix 14
AB5
B
7 19Right-handed alpha
Helix 15
AB6
B
89 92Right-handed 310
Helix 16
AB7
B
93 100Right-handed alpha
Helix 17
AB8
B
143 160Right-handed alpha
Helix 18
AB9
B
162 174Right-handed alpha
Helix 19
AC1
B
216 228Right-handed alpha
Helix 20
AC2
B
239 254Right-handed alpha
Helix 21
AC3
B
286 304Right-handed alpha
Helix 22
AC4
B
313 330Right-handed alpha
Helix 23
AC5
B
333 341Right-handed alpha
Helix 24
AC6
B
343 355Right-handed alpha
Helix 25
AC7
B
358 365Right-handed alpha
Helix 26
AC8
B
365 379Right-handed alpha
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There are 6 sheets in PDB entry 9QW7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
64 66anti-parallel
Strand 4
A
75 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
101 109anti-parallel
Strand 3
A
263 270anti-parallel
Strand 4
A
276 282anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
114 120anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
200 207anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
64 67anti-parallel
Strand 4
B
75 78anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 237first strand
Strand 2
B
101 109anti-parallel
Strand 3
B
263 270anti-parallel
Strand 4
B
276 282anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
175 182anti-parallel
Strand 4
B
199 207anti-parallel
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