Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QWJ entry

There are 5 chains in PDB entry 9QWJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 2	TRP 388
D	SER 3	PHE 190
E	THR 2	ASP 245
N	ILE 2	TRP 388
T	ASN 2	LYS 77

There are 32 helices in PDB entry 9QWJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	169	196	Right-handed alpha
Helix 2	AA2	B	197	202	Right-handed 310
Helix 3	AA3	B	247	261	Right-handed alpha
Helix 4	AA4	B	262	275	Right-handed alpha
Helix 5	AA5	B	275	288	Right-handed alpha
Helix 6	AA6	B	288	293	Right-handed alpha
Helix 7	AA7	B	376	380	Right-handed 310
Helix 8	AA8	D	67	71	Right-handed 310
Helix 9	AA9	D	81	85	Right-handed 310
Helix 10	AB1	D	95	98	Right-handed 310
Helix 11	AB2	D	166	169	Right-handed 310
Helix 12	AB3	D	185	190	Right-handed alpha
Helix 13	AB4	E	83	87	Right-handed 310
Helix 14	AB5	E	117	121	Right-handed 310
Helix 15	AB6	E	132	140	Right-handed alpha
Helix 16	AB7	E	199	203	Right-handed alpha
Helix 17	AB8	N	169	196	Right-handed alpha
Helix 18	AB9	N	197	202	Right-handed 310
Helix 19	AC1	N	248	261	Right-handed alpha
Helix 20	AC2	N	262	275	Right-handed alpha
Helix 21	AC3	N	275	288	Right-handed alpha
Helix 22	AC4	N	288	293	Right-handed alpha
Helix 23	AC5	N	376	380	Right-handed 310
Helix 24	AC6	T	67	71	Right-handed 310
Helix 25	AC7	T	81	85	Right-handed 310
Helix 26	AC8	T	95	98	Right-handed 310
Helix 27	AC9	T	166	169	Right-handed 310
Helix 28	AD1	T	185	189	Right-handed 310
Helix 29	AD2	U	83	87	Right-handed 310
Helix 30	AD3	U	117	121	Right-handed 310
Helix 31	AD4	U	132	140	Right-handed alpha
Helix 32	AD5	U	199	203	Right-handed alpha

There are 38 sheets in PDB entry 9QWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	22	31	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	51	52	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	22	31	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	56	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	145	151	anti-parallel
Strand 3	B	133	142	anti-parallel
Strand 4	B	117	130	anti-parallel
Strand 5	B	204	215	anti-parallel
Strand 6	B	221	228	anti-parallel
Strand 7	B	231	237	anti-parallel
Strand 8	B	240	243	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	305	first strand
Strand 2	B	314	322	anti-parallel
Strand 3	B	354	361	anti-parallel
Strand 4	B	341	343	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	305	first strand
Strand 2	B	314	322	anti-parallel
Strand 3	B	354	361	anti-parallel
Strand 4	B	347	348	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	328	333	anti-parallel
Strand 3	B	370	375	anti-parallel
Strand 4	B	384	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	23	25	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	32	38	anti-parallel
Strand 5	D	45	50	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	101	103	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	75	77	anti-parallel
Strand 3	D	62	65	anti-parallel
Strand 4	D	56	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	126	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	170	179	anti-parallel
Strand 4	D	155	157	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	126	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	170	179	anti-parallel
Strand 4	D	161	165	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	75	79	anti-parallel
Strand 4	E	65	68	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	110	115	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	31	37	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	53	57	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	110	115	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	178	179	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	208	215	anti-parallel
Strand 4	E	234	241	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	12	first strand
Strand 2	N	22	31	anti-parallel
Strand 3	N	63	71	anti-parallel
Strand 4	N	51	52	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	12	first strand
Strand 2	N	22	31	anti-parallel
Strand 3	N	63	71	anti-parallel
Strand 4	N	56	57	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	46	first strand
Strand 2	N	37	42	anti-parallel
Strand 3	N	79	84	anti-parallel
Strand 4	N	92	95	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	159	first strand
Strand 2	N	145	151	anti-parallel
Strand 3	N	133	142	anti-parallel
Strand 4	N	119	130	anti-parallel
Strand 5	N	204	213	anti-parallel
Strand 6	N	221	228	anti-parallel
Strand 7	N	231	237	anti-parallel
Strand 8	N	240	243	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	299	305	first strand
Strand 2	N	314	322	anti-parallel
Strand 3	N	354	361	anti-parallel
Strand 4	N	341	343	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	299	305	first strand
Strand 2	N	314	322	anti-parallel
Strand 3	N	354	361	anti-parallel
Strand 4	N	347	348	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	328	332	first strand
Strand 2	N	371	375	anti-parallel
Strand 3	N	384	387	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	6	first strand
Strand 2	T	23	25	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	107	112	parallel
Strand 3	T	86	93	anti-parallel
Strand 4	T	32	38	anti-parallel
Strand 5	T	45	50	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	107	112	parallel
Strand 3	T	86	93	anti-parallel
Strand 4	T	101	103	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	19	21	first strand
Strand 2	T	75	77	anti-parallel
Strand 3	T	62	65	anti-parallel
Strand 4	T	56	59	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	121	126	first strand
Strand 2	T	134	139	anti-parallel
Strand 3	T	170	179	anti-parallel
Strand 4	T	155	157	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	121	126	first strand
Strand 2	T	134	139	anti-parallel
Strand 3	T	170	179	anti-parallel
Strand 4	T	161	165	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	5	7	first strand
Strand 2	U	19	24	anti-parallel
Strand 3	U	75	79	anti-parallel
Strand 4	U	65	68	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	14	first strand
Strand 2	U	110	115	parallel
Strand 3	U	88	95	anti-parallel
Strand 4	U	31	37	anti-parallel
Strand 5	U	44	50	anti-parallel
Strand 6	U	53	57	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	14	first strand
Strand 2	U	110	115	parallel
Strand 3	U	88	95	anti-parallel
Strand 4	U	105	106	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	125	129	first strand
Strand 2	U	141	151	anti-parallel
Strand 3	U	189	198	anti-parallel
Strand 4	U	171	173	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	125	129	first strand
Strand 2	U	141	151	anti-parallel
Strand 3	U	189	198	anti-parallel
Strand 4	U	178	179	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	165	167	first strand
Strand 2	U	156	162	anti-parallel
Strand 3	U	208	215	anti-parallel
Strand 4	U	234	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QWJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWJ