Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QWM entry

There are 2 chains in PDB entry 9QWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4VAL 230
B
 SER 14ASP 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9QWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
18 22Right-handed 310
Helix 3
AA3
A
73 95Right-handed alpha
Helix 4
AA4
A
118 136Right-handed alpha
Helix 5
AA5
A
172 184Right-handed alpha
Helix 6
AA6
A
194 201Right-handed alpha
Helix 7
AA7
B
16 26Right-handed alpha
Helix 8
AA8
B
28 38Right-handed alpha
Helix 9
AA9
B
51 60Right-handed alpha
Helix 10
AB1
B
61 71Right-handed alpha
Helix 11
AB2
B
84 92Right-handed alpha
Helix 12
AB3
B
94 105Right-handed alpha
Helix 13
AB4
B
117 126Right-handed alpha
Helix 14
AB5
B
127 137Right-handed alpha
Helix 15
AB6
B
150 159Right-handed alpha
Helix 16
AB7
B
160 174Right-handed alpha
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There are 2 sheets in PDB entry 9QWM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
167 171anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
55 61anti-parallel
Strand 4
A
147 153anti-parallel
Strand 5
A
190 193parallel
Strand 6
A
218 228anti-parallel
Strand 7
A
204 214anti-parallel
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