Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QWP entry

There are 4 chains in PDB entry 9QWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 74	SER 1866
B	GLN 16	SER 1493
C	GLN 16	GLU 1448
D	VAL 1519	ALA 1583

There are164 helices in PDB entry 9QWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	96	Right-handed alpha
Helix 2	AA2	A	96	102	Right-handed alpha
Helix 3	AA3	A	105	117	Right-handed alpha
Helix 4	AA4	A	122	141	Right-handed alpha
Helix 5	AA5	A	142	144	Right-handed 310
Helix 6	AA6	A	145	154	Right-handed alpha
Helix 7	AA7	A	170	176	Right-handed alpha
Helix 8	AA8	A	206	220	Right-handed alpha
Helix 9	AA9	A	231	254	Right-handed alpha
Helix 10	AB1	A	297	310	Right-handed alpha
Helix 11	AB2	A	384	396	Right-handed alpha
Helix 12	AB3	A	398	412	Right-handed alpha
Helix 13	AB4	A	420	434	Right-handed alpha
Helix 14	AB5	A	439	443	Right-handed 310
Helix 15	AB6	A	507	520	Right-handed alpha
Helix 16	AB7	A	521	523	Right-handed 310
Helix 17	AB8	A	533	555	Right-handed alpha
Helix 18	AB9	A	559	578	Right-handed alpha
Helix 19	AC1	A	589	613	Right-handed alpha
Helix 20	AC2	A	616	629	Right-handed alpha
Helix 21	AC3	A	633	656	Right-handed alpha
Helix 22	AC4	A	663	671	Right-handed alpha
Helix 23	AC5	A	924	937	Right-handed alpha
Helix 24	AC6	A	941	945	Right-handed 310
Helix 25	AC7	A	947	972	Right-handed alpha
Helix 26	AC8	A	994	1002	Right-handed alpha
Helix 27	AC9	A	1003	1004	Right-handed 310
Helix 28	AD1	A	1005	1007	Right-handed 310
Helix 29	AD2	A	1008	1024	Right-handed alpha
Helix 30	AD3	A	1032	1048	Right-handed alpha
Helix 31	AD4	A	1051	1061	Right-handed alpha
Helix 32	AD5	A	1064	1069	Right-handed alpha
Helix 33	AD6	A	1074	1091	Right-handed alpha
Helix 34	AD7	A	1097	1108	Right-handed alpha
Helix 35	AD8	A	1110	1115	Right-handed alpha
Helix 36	AD9	A	1134	1150	Right-handed alpha
Helix 37	AE1	A	1154	1176	Right-handed alpha
Helix 38	AE2	A	1180	1193	Right-handed alpha
Helix 39	AE3	A	1197	1211	Right-handed alpha
Helix 40	AE4	A	1214	1222	Right-handed alpha
Helix 41	AE5	A	1224	1241	Right-handed alpha
Helix 42	AE6	A	1249	1270	Right-handed alpha
Helix 43	AE7	A	1271	1276	Right-handed alpha
Helix 44	AE8	A	1281	1287	Right-handed alpha
Helix 45	AE9	A	1293	1308	Right-handed alpha
Helix 46	AF1	A	1321	1326	Right-handed 310
Helix 47	AF2	A	1369	1386	Right-handed alpha
Helix 48	AF3	A	1417	1422	Right-handed alpha
Helix 49	AF4	A	1519	1531	Right-handed alpha
Helix 50	AF5	A	1532	1535	Right-handed 310
Helix 51	AF6	A	1553	1578	Right-handed alpha
Helix 52	AF7	A	1579	1581	Right-handed 310
Helix 53	AF8	A	1601	1611	Right-handed alpha
Helix 54	AF9	A	1616	1620	Right-handed 310
Helix 55	AG1	A	1628	1641	Right-handed alpha
Helix 56	AG2	A	1660	1666	Right-handed alpha
Helix 57	AG3	A	1671	1680	Right-handed alpha
Helix 58	AG4	A	1688	1690	Right-handed 310
Helix 59	AG5	A	1729	1741	Right-handed alpha
Helix 60	AG6	A	1806	1826	Right-handed alpha
Helix 61	AG7	A	1831	1847	Right-handed alpha
Helix 62	AG8	A	1852	1862	Right-handed alpha
Helix 63	AG9	B	20	25	Right-handed 310
Helix 64	AH1	B	26	46	Right-handed alpha
Helix 65	AH2	B	59	74	Right-handed alpha
Helix 66	AH3	B	81	95	Right-handed alpha
Helix 67	AH4	B	105	111	Right-handed alpha
Helix 68	AH5	B	111	124	Right-handed alpha
Helix 69	AH6	B	125	128	Right-handed 310
Helix 70	AH7	B	133	154	Right-handed alpha
Helix 71	AH8	B	159	179	Right-handed alpha
Helix 72	AH9	B	186	210	Right-handed alpha
Helix 73	AI1	B	213	225	Right-handed alpha
Helix 74	AI2	B	226	228	Right-handed 310
Helix 75	AI3	B	230	253	Right-handed alpha
Helix 76	AI4	B	263	270	Right-handed alpha
Helix 77	AI5	B	275	288	Right-handed alpha
Helix 78	AI6	B	292	297	Right-handed 310
Helix 79	AI7	B	298	303	Right-handed alpha
Helix 80	AI8	B	305	315	Right-handed alpha
Helix 81	AI9	B	318	323	Right-handed 310
Helix 82	AJ1	B	325	329	Right-handed 310
Helix 83	AJ2	B	330	351	Right-handed alpha
Helix 84	AJ3	B	439	460	Right-handed alpha
Helix 85	AJ4	B	509	525	Right-handed alpha
Helix 86	AJ5	B	534	549	Right-handed alpha
Helix 87	AJ6	B	556	567	Right-handed alpha
Helix 88	AJ7	B	570	574	Right-handed 310
Helix 89	AJ8	B	577	580	Right-handed 310
Helix 90	AJ9	B	581	590	Right-handed alpha
Helix 91	AK1	B	600	604	Right-handed 310
Helix 92	AK2	B	606	620	Right-handed alpha
Helix 93	AK3	B	623	629	Right-handed alpha
Helix 94	AK4	B	655	673	Right-handed alpha
Helix 95	AK5	B	675	700	Right-handed alpha
Helix 96	AK6	B	754	773	Right-handed alpha
Helix 97	AK7	B	778	793	Right-handed alpha
Helix 98	AK8	B	799	819	Right-handed alpha
Helix 99	AK9	B	820	825	Right-handed 310
Helix 100	AL1	B	826	847	Right-handed alpha
Helix 101	AL2	B	848	852	Right-handed 310
Helix 102	AL3	B	853	870	Right-handed alpha
Helix 103	AL4	B	892	908	Right-handed alpha
Helix 104	AL5	B	927	936	Right-handed alpha
Helix 105	AL6	B	995	999	Right-handed 310
Helix 106	AL7	B	1029	1034	Right-handed alpha
Helix 107	AL8	B	1038	1043	Right-handed 310
Helix 108	AL9	B	1052	1054	Right-handed 310
Helix 109	AM1	B	1055	1087	Right-handed alpha
Helix 110	AM2	B	1091	1095	Right-handed 310
Helix 111	AM3	B	1106	1115	Right-handed alpha
Helix 112	AM4	B	1119	1124	Right-handed alpha
Helix 113	AM5	B	1144	1155	Right-handed alpha
Helix 114	AM6	B	1174	1184	Right-handed alpha
Helix 115	AM7	B	1189	1198	Right-handed alpha
Helix 116	AM8	B	1214	1218	Right-handed 310
Helix 117	AM9	B	1240	1244	Right-handed 310
Helix 118	AN1	B	1350	1354	Right-handed 310
Helix 119	AN2	B	1359	1367	Right-handed 310
Helix 120	AN3	B	1430	1449	Right-handed alpha
Helix 121	AN4	B	1454	1471	Right-handed alpha
Helix 122	AN5	B	1475	1485	Right-handed alpha
Helix 123	AN6	C	20	24	Right-handed 310
Helix 124	AN7	C	26	46	Right-handed alpha
Helix 125	AN8	C	59	76	Right-handed alpha
Helix 126	AN9	C	81	95	Right-handed alpha
Helix 127	AO1	C	96	98	Right-handed 310
Helix 128	AO2	C	105	111	Right-handed alpha
Helix 129	AO3	C	112	123	Right-handed alpha
Helix 130	AO4	C	124	126	Right-handed 310
Helix 131	AO5	C	133	155	Right-handed alpha
Helix 132	AO6	C	159	179	Right-handed alpha
Helix 133	AO7	C	186	210	Right-handed alpha
Helix 134	AO8	C	213	225	Right-handed alpha
Helix 135	AO9	C	226	228	Right-handed 310
Helix 136	AP1	C	230	253	Right-handed alpha
Helix 137	AP2	C	263	269	Right-handed alpha
Helix 138	AP3	C	275	288	Right-handed alpha
Helix 139	AP4	C	292	297	Right-handed 310
Helix 140	AP5	C	298	304	Right-handed alpha
Helix 141	AP6	C	305	314	Right-handed alpha
Helix 142	AP7	C	318	325	Right-handed alpha
Helix 143	AP8	C	330	351	Right-handed alpha
Helix 144	AP9	C	439	447	Right-handed alpha
Helix 145	AQ1	C	447	457	Right-handed alpha
Helix 146	AQ2	C	509	525	Right-handed alpha
Helix 147	AQ3	C	534	549	Right-handed alpha
Helix 148	AQ4	C	556	566	Right-handed alpha
Helix 149	AQ5	C	577	590	Right-handed alpha
Helix 150	AQ6	C	598	603	Right-handed alpha
Helix 151	AQ7	C	606	620	Right-handed alpha
Helix 152	AQ8	C	622	629	Right-handed alpha
Helix 153	AQ9	C	654	673	Right-handed alpha
Helix 154	AR1	C	675	699	Right-handed alpha
Helix 155	AR2	C	756	773	Right-handed alpha
Helix 156	AR3	C	777	793	Right-handed alpha
Helix 157	AR4	C	1174	1183	Right-handed alpha
Helix 158	AR5	C	1189	1200	Right-handed alpha
Helix 159	AR6	C	1241	1247	Right-handed alpha
Helix 160	AR7	C	1350	1354	Right-handed 310
Helix 161	AR8	C	1359	1365	Right-handed alpha
Helix 162	AR9	C	1429	1448	Right-handed alpha
Helix 163	AS1	D	1520	1531	Right-handed alpha
Helix 164	AS2	D	1553	1581	Right-handed alpha

There are 7 sheets in PDB entry 9QWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1848	1849	first strand
Strand 2	A	1622	1625	anti-parallel
Strand 3	A	1426	1431	anti-parallel
Strand 4	A	1436	1440	anti-parallel
Strand 5	A	1459	1465	anti-parallel
Strand 6	A	1468	1475	anti-parallel
Strand 7	B	988	991	anti-parallel
Strand 8	B	973	974	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1683	1686	first strand
Strand 2	A	1706	1711	anti-parallel
Strand 3	A	1715	1721	anti-parallel
Strand 4	A	1645	1651	parallel
Strand 5	A	1745	1749	parallel
Strand 6	A	1768	1774	parallel
Strand 7	A	1780	1786	anti-parallel
Strand 8	A	1800	1802	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	653	654	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	958	first strand
Strand 2	B	946	950	anti-parallel
Strand 3	B	1135	1137	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	979	first strand
Strand 2	B	984	986	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1201	1204	first strand
Strand 2	B	1250	1255	anti-parallel
Strand 3	B	1260	1264	anti-parallel
Strand 4	B	1161	1168	parallel
Strand 5	B	1342	1348	parallel
Strand 6	B	1391	1396	parallel
Strand 7	B	1402	1407	anti-parallel
Strand 8	B	1423	1425	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1252	1255	first strand
Strand 2	C	1260	1264	anti-parallel
Strand 3	C	1163	1168	parallel
Strand 4	C	1344	1348	parallel
Strand 5	C	1391	1396	parallel
Strand 6	C	1402	1407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWP