Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QWS entry

There are 6 chains in PDB entry 9QWS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 9	LYS 149
A	GLU 3222	CYS 4515
C	SER 289	GLU 331
B	GLU 3222	CYS 4515
D	SER 289	GLU 331
F	GLN 9	LYS 149

There are133 helices in PDB entry 9QWS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	9	21	Right-handed alpha
Helix 2	AA2	E	29	31	Right-handed 310
Helix 3	AA3	E	32	39	Right-handed alpha
Helix 4	AA4	E	45	57	Right-handed alpha
Helix 5	AA5	E	65	75	Right-handed alpha
Helix 6	AA6	E	83	94	Right-handed alpha
Helix 7	AA7	E	102	114	Right-handed alpha
Helix 8	AA8	E	118	129	Right-handed alpha
Helix 9	AA9	E	138	148	Right-handed alpha
Helix 10	AB1	A	3223	3247	Right-handed alpha
Helix 11	AB2	A	3265	3286	Right-handed alpha
Helix 12	AB3	A	3286	3297	Right-handed alpha
Helix 13	AB4	A	3300	3308	Right-handed alpha
Helix 14	AB5	A	3315	3328	Right-handed alpha
Helix 15	AB6	A	3329	3338	Right-handed alpha
Helix 16	AB7	A	3387	3403	Right-handed alpha
Helix 17	AB8	A	3404	3417	Right-handed alpha
Helix 18	AB9	A	3421	3438	Right-handed alpha
Helix 19	AC1	A	3440	3455	Right-handed alpha
Helix 20	AC2	A	3456	3464	Right-handed 310
Helix 21	AC3	A	3465	3479	Right-handed alpha
Helix 22	AC4	A	3482	3506	Right-handed alpha
Helix 23	AC5	A	3509	3518	Right-handed alpha
Helix 24	AC6	A	3532	3537	Right-handed alpha
Helix 25	AC7	A	3547	3550	Right-handed alpha
Helix 26	AC8	A	3601	3606	Right-handed alpha
Helix 27	AC9	A	3728	3755	Right-handed alpha
Helix 28	AD1	A	3756	3770	Right-handed alpha
Helix 29	AD2	A	3793	3806	Right-handed alpha
Helix 30	AD3	A	3806	3842	Right-handed alpha
Helix 31	AD4	A	3853	3860	Right-handed alpha
Helix 32	AD5	A	3861	3864	Right-handed 310
Helix 33	AD6	A	3872	3891	Right-handed alpha
Helix 34	AD7	A	3893	3904	Right-handed alpha
Helix 35	AD8	A	3904	3912	Right-handed alpha
Helix 36	AD9	A	3918	3933	Right-handed alpha
Helix 37	AE1	A	3936	3957	Right-handed alpha
Helix 38	AE2	A	3961	3967	Right-handed alpha
Helix 39	AE3	A	3968	3981	Right-handed alpha
Helix 40	AE4	A	3985	4000	Right-handed alpha
Helix 41	AE5	A	4005	4012	Right-handed alpha
Helix 42	AE6	A	4012	4025	Right-handed alpha
Helix 43	AE7	A	4032	4036	Right-handed 310
Helix 44	AE8	A	4038	4042	Right-handed 310
Helix 45	AE9	A	4055	4060	Right-handed alpha
Helix 46	AF1	A	4061	4062	Right-handed 310
Helix 47	AF2	A	4063	4066	Right-handed 310
Helix 48	AF3	A	4067	4074	Right-handed alpha
Helix 49	AF4	A	4089	4113	Right-handed alpha
Helix 50	AF5	A	4128	4134	Right-handed alpha
Helix 51	AF6	A	4138	4152	Right-handed alpha
Helix 52	AF7	A	4155	4169	Right-handed alpha
Helix 53	AF8	A	4170	4174	Right-handed 310
Helix 54	AF9	A	4180	4191	Right-handed alpha
Helix 55	AG1	A	4193	4203	Right-handed alpha
Helix 56	AG2	A	4205	4227	Right-handed alpha
Helix 57	AG3	A	4235	4251	Right-handed alpha
Helix 58	AG4	A	4251	4258	Right-handed alpha
Helix 59	AG5	A	4258	4276	Right-handed alpha
Helix 60	AG6	A	4281	4299	Right-handed alpha
Helix 61	AG7	A	4302	4320	Right-handed alpha
Helix 62	AG8	A	4326	4339	Right-handed alpha
Helix 63	AG9	A	4477	4483	Right-handed alpha
Helix 64	AH1	A	4484	4494	Right-handed alpha
Helix 65	AH2	A	4501	4515	Right-handed alpha
Helix 66	AH3	C	292	296	Right-handed 310
Helix 67	AH4	C	302	327	Right-handed alpha
Helix 68	AH5	B	3223	3247	Right-handed alpha
Helix 69	AH6	B	3265	3286	Right-handed alpha
Helix 70	AH7	B	3286	3297	Right-handed alpha
Helix 71	AH8	B	3300	3308	Right-handed alpha
Helix 72	AH9	B	3315	3328	Right-handed alpha
Helix 73	AI1	B	3329	3338	Right-handed alpha
Helix 74	AI2	B	3387	3403	Right-handed alpha
Helix 75	AI3	B	3404	3417	Right-handed alpha
Helix 76	AI4	B	3421	3438	Right-handed alpha
Helix 77	AI5	B	3440	3455	Right-handed alpha
Helix 78	AI6	B	3456	3464	Right-handed 310
Helix 79	AI7	B	3465	3479	Right-handed alpha
Helix 80	AI8	B	3482	3506	Right-handed alpha
Helix 81	AI9	B	3509	3518	Right-handed alpha
Helix 82	AJ1	B	3532	3537	Right-handed alpha
Helix 83	AJ2	B	3601	3606	Right-handed alpha
Helix 84	AJ3	B	3728	3755	Right-handed alpha
Helix 85	AJ4	B	3756	3770	Right-handed alpha
Helix 86	AJ5	B	3793	3806	Right-handed alpha
Helix 87	AJ6	B	3806	3842	Right-handed alpha
Helix 88	AJ7	B	3853	3860	Right-handed alpha
Helix 89	AJ8	B	3861	3864	Right-handed 310
Helix 90	AJ9	B	3872	3891	Right-handed alpha
Helix 91	AK1	B	3893	3904	Right-handed alpha
Helix 92	AK2	B	3904	3912	Right-handed alpha
Helix 93	AK3	B	3918	3933	Right-handed alpha
Helix 94	AK4	B	3936	3957	Right-handed alpha
Helix 95	AK5	B	3961	3967	Right-handed alpha
Helix 96	AK6	B	3968	3981	Right-handed alpha
Helix 97	AK7	B	3985	4000	Right-handed alpha
Helix 98	AK8	B	4005	4012	Right-handed alpha
Helix 99	AK9	B	4012	4025	Right-handed alpha
Helix 100	AL1	B	4032	4036	Right-handed 310
Helix 101	AL2	B	4038	4042	Right-handed 310
Helix 102	AL3	B	4055	4060	Right-handed alpha
Helix 103	AL4	B	4061	4062	Right-handed 310
Helix 104	AL5	B	4063	4066	Right-handed 310
Helix 105	AL6	B	4067	4074	Right-handed alpha
Helix 106	AL7	B	4089	4113	Right-handed alpha
Helix 107	AL8	B	4128	4134	Right-handed alpha
Helix 108	AL9	B	4138	4152	Right-handed alpha
Helix 109	AM1	B	4155	4169	Right-handed alpha
Helix 110	AM2	B	4170	4174	Right-handed 310
Helix 111	AM3	B	4180	4191	Right-handed alpha
Helix 112	AM4	B	4193	4203	Right-handed alpha
Helix 113	AM5	B	4205	4227	Right-handed alpha
Helix 114	AM6	B	4235	4251	Right-handed alpha
Helix 115	AM7	B	4251	4258	Right-handed alpha
Helix 116	AM8	B	4258	4276	Right-handed alpha
Helix 117	AM9	B	4281	4299	Right-handed alpha
Helix 118	AN1	B	4302	4320	Right-handed alpha
Helix 119	AN2	B	4326	4339	Right-handed alpha
Helix 120	AN3	B	4477	4483	Right-handed alpha
Helix 121	AN4	B	4484	4494	Right-handed alpha
Helix 122	AN5	B	4501	4515	Right-handed alpha
Helix 123	AN6	D	292	296	Right-handed 310
Helix 124	AN7	D	302	327	Right-handed alpha
Helix 125	AN8	F	10	21	Right-handed alpha
Helix 126	AN9	F	29	31	Right-handed 310
Helix 127	AO1	F	32	39	Right-handed alpha
Helix 128	AO2	F	45	57	Right-handed alpha
Helix 129	AO3	F	65	75	Right-handed alpha
Helix 130	AO4	F	83	94	Right-handed alpha
Helix 131	AO5	F	102	114	Right-handed alpha
Helix 132	AO6	F	118	129	Right-handed alpha
Helix 133	AO7	F	138	148	Right-handed alpha

There are 8 sheets in PDB entry 9QWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3249	3251	first strand
Strand 2	A	3256	3258	anti-parallel
Strand 3	A	3851	3852	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3543	3546	first strand
Strand 2	A	3710	3717	anti-parallel
Strand 3	A	3560	3579	anti-parallel
Strand 4	A	3551	3556	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3543	3546	first strand
Strand 2	A	3710	3717	anti-parallel
Strand 3	A	3560	3579	anti-parallel
Strand 4	A	3626	3646	anti-parallel
Strand 5	A	3589	3595	anti-parallel
Strand 6	A	3613	3619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4051	4052	first strand
Strand 2	A	4119	4120	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3249	3251	first strand
Strand 2	B	3256	3258	anti-parallel
Strand 3	B	3851	3852	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3543	3546	first strand
Strand 2	B	3710	3717	anti-parallel
Strand 3	B	3560	3579	anti-parallel
Strand 4	B	3551	3556	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3543	3546	first strand
Strand 2	B	3710	3717	anti-parallel
Strand 3	B	3560	3579	anti-parallel
Strand 4	B	3626	3646	anti-parallel
Strand 5	B	3589	3595	anti-parallel
Strand 6	B	3613	3619	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4051	4052	first strand
Strand 2	B	4119	4120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QWS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWS