Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QWU entry

There are 6 chains in PDB entry 9QWU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLU 8	THR 147
A	LYS 3223	GLY 4301
C	SER 289	GLU 331
B	LYS 3223	GLY 4301
D	SER 289	GLU 331
F	PHE 13	ASP 130

There are121 helices in PDB entry 9QWU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	8	21	Right-handed alpha
Helix 2	AA2	E	29	31	Right-handed 310
Helix 3	AA3	E	32	40	Right-handed alpha
Helix 4	AA4	E	45	57	Right-handed alpha
Helix 5	AA5	E	66	74	Right-handed alpha
Helix 6	AA6	E	82	94	Right-handed alpha
Helix 7	AA7	E	102	113	Right-handed alpha
Helix 8	AA8	E	118	128	Right-handed alpha
Helix 9	AA9	E	138	147	Right-handed alpha
Helix 10	AB1	A	3224	3247	Right-handed alpha
Helix 11	AB2	A	3265	3286	Right-handed alpha
Helix 12	AB3	A	3286	3297	Right-handed alpha
Helix 13	AB4	A	3300	3308	Right-handed alpha
Helix 14	AB5	A	3315	3328	Right-handed alpha
Helix 15	AB6	A	3329	3338	Right-handed alpha
Helix 16	AB7	A	3388	3403	Right-handed alpha
Helix 17	AB8	A	3404	3417	Right-handed alpha
Helix 18	AB9	A	3421	3438	Right-handed alpha
Helix 19	AC1	A	3440	3455	Right-handed alpha
Helix 20	AC2	A	3456	3464	Right-handed 310
Helix 21	AC3	A	3465	3479	Right-handed alpha
Helix 22	AC4	A	3482	3506	Right-handed alpha
Helix 23	AC5	A	3509	3518	Right-handed alpha
Helix 24	AC6	A	3532	3537	Right-handed alpha
Helix 25	AC7	A	3547	3550	Right-handed alpha
Helix 26	AC8	A	3728	3755	Right-handed alpha
Helix 27	AC9	A	3756	3770	Right-handed alpha
Helix 28	AD1	A	3793	3805	Right-handed alpha
Helix 29	AD2	A	3806	3843	Right-handed alpha
Helix 30	AD3	A	3853	3860	Right-handed alpha
Helix 31	AD4	A	3861	3864	Right-handed 310
Helix 32	AD5	A	3872	3891	Right-handed alpha
Helix 33	AD6	A	3893	3904	Right-handed alpha
Helix 34	AD7	A	3904	3912	Right-handed alpha
Helix 35	AD8	A	3918	3932	Right-handed alpha
Helix 36	AD9	A	3936	3957	Right-handed alpha
Helix 37	AE1	A	3961	3967	Right-handed alpha
Helix 38	AE2	A	3968	3981	Right-handed alpha
Helix 39	AE3	A	3985	4000	Right-handed alpha
Helix 40	AE4	A	4005	4012	Right-handed alpha
Helix 41	AE5	A	4012	4025	Right-handed alpha
Helix 42	AE6	A	4038	4042	Right-handed 310
Helix 43	AE7	A	4055	4060	Right-handed alpha
Helix 44	AE8	A	4061	4062	Right-handed 310
Helix 45	AE9	A	4063	4066	Right-handed 310
Helix 46	AF1	A	4067	4074	Right-handed alpha
Helix 47	AF2	A	4088	4113	Right-handed alpha
Helix 48	AF3	A	4128	4134	Right-handed alpha
Helix 49	AF4	A	4138	4152	Right-handed alpha
Helix 50	AF5	A	4155	4169	Right-handed alpha
Helix 51	AF6	A	4170	4173	Right-handed 310
Helix 52	AF7	A	4177	4179	Right-handed 310
Helix 53	AF8	A	4180	4191	Right-handed alpha
Helix 54	AF9	A	4193	4203	Right-handed alpha
Helix 55	AG1	A	4204	4227	Right-handed alpha
Helix 56	AG2	A	4235	4251	Right-handed alpha
Helix 57	AG3	A	4251	4258	Right-handed alpha
Helix 58	AG4	A	4262	4276	Right-handed alpha
Helix 59	AG5	A	4281	4299	Right-handed alpha
Helix 60	AG6	C	292	296	Right-handed 310
Helix 61	AG7	C	303	327	Right-handed alpha
Helix 62	AG8	B	3224	3247	Right-handed alpha
Helix 63	AG9	B	3265	3286	Right-handed alpha
Helix 64	AH1	B	3286	3297	Right-handed alpha
Helix 65	AH2	B	3300	3308	Right-handed alpha
Helix 66	AH3	B	3315	3328	Right-handed alpha
Helix 67	AH4	B	3329	3338	Right-handed alpha
Helix 68	AH5	B	3388	3403	Right-handed alpha
Helix 69	AH6	B	3404	3417	Right-handed alpha
Helix 70	AH7	B	3421	3438	Right-handed alpha
Helix 71	AH8	B	3440	3455	Right-handed alpha
Helix 72	AH9	B	3456	3464	Right-handed 310
Helix 73	AI1	B	3465	3479	Right-handed alpha
Helix 74	AI2	B	3482	3506	Right-handed alpha
Helix 75	AI3	B	3509	3518	Right-handed alpha
Helix 76	AI4	B	3532	3537	Right-handed alpha
Helix 77	AI5	B	3547	3550	Right-handed alpha
Helix 78	AI6	B	3728	3755	Right-handed alpha
Helix 79	AI7	B	3756	3770	Right-handed alpha
Helix 80	AI8	B	3788	3792	Right-handed 310
Helix 81	AI9	B	3793	3806	Right-handed alpha
Helix 82	AJ1	B	3806	3843	Right-handed alpha
Helix 83	AJ2	B	3853	3860	Right-handed alpha
Helix 84	AJ3	B	3861	3864	Right-handed 310
Helix 85	AJ4	B	3872	3891	Right-handed alpha
Helix 86	AJ5	B	3893	3904	Right-handed alpha
Helix 87	AJ6	B	3904	3912	Right-handed alpha
Helix 88	AJ7	B	3918	3932	Right-handed alpha
Helix 89	AJ8	B	3936	3957	Right-handed alpha
Helix 90	AJ9	B	3961	3967	Right-handed alpha
Helix 91	AK1	B	3968	3981	Right-handed alpha
Helix 92	AK2	B	3985	4000	Right-handed alpha
Helix 93	AK3	B	4005	4012	Right-handed alpha
Helix 94	AK4	B	4012	4025	Right-handed alpha
Helix 95	AK5	B	4038	4043	Right-handed 310
Helix 96	AK6	B	4055	4060	Right-handed alpha
Helix 97	AK7	B	4061	4062	Right-handed 310
Helix 98	AK8	B	4063	4066	Right-handed 310
Helix 99	AK9	B	4067	4074	Right-handed alpha
Helix 100	AL1	B	4088	4110	Right-handed alpha
Helix 101	AL2	B	4127	4134	Right-handed alpha
Helix 102	AL3	B	4138	4152	Right-handed alpha
Helix 103	AL4	B	4155	4169	Right-handed alpha
Helix 104	AL5	B	4170	4173	Right-handed 310
Helix 105	AL6	B	4177	4179	Right-handed 310
Helix 106	AL7	B	4180	4191	Right-handed alpha
Helix 107	AL8	B	4193	4203	Right-handed alpha
Helix 108	AL9	B	4205	4227	Right-handed alpha
Helix 109	AM1	B	4235	4251	Right-handed alpha
Helix 110	AM2	B	4251	4258	Right-handed alpha
Helix 111	AM3	B	4258	4276	Right-handed alpha
Helix 112	AM4	B	4281	4299	Right-handed alpha
Helix 113	AM5	D	292	296	Right-handed 310
Helix 114	AM6	D	303	326	Right-handed alpha
Helix 115	AM7	F	14	21	Right-handed alpha
Helix 116	AM8	F	32	40	Right-handed alpha
Helix 117	AM9	F	45	57	Right-handed alpha
Helix 118	AN1	F	65	73	Right-handed alpha
Helix 119	AN2	F	84	94	Right-handed alpha
Helix 120	AN3	F	102	114	Right-handed alpha
Helix 121	AN4	F	118	129	Right-handed alpha

There are 9 sheets in PDB entry 9QWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	28	first strand
Strand 2	E	64	65	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3249	3251	first strand
Strand 2	A	3256	3258	anti-parallel
Strand 3	A	3851	3852	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3543	3546	first strand
Strand 2	A	3712	3717	anti-parallel
Strand 3	A	3560	3577	anti-parallel
Strand 4	A	3551	3556	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3543	3546	first strand
Strand 2	A	3712	3717	anti-parallel
Strand 3	A	3560	3577	anti-parallel
Strand 4	A	3626	3643	anti-parallel
Strand 5	A	3591	3595	anti-parallel
Strand 6	A	3613	3617	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4051	4052	first strand
Strand 2	A	4119	4120	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3249	3251	first strand
Strand 2	B	3256	3258	anti-parallel
Strand 3	B	3851	3852	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3543	3546	first strand
Strand 2	B	3712	3717	anti-parallel
Strand 3	B	3560	3577	anti-parallel
Strand 4	B	3551	3556	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3543	3546	first strand
Strand 2	B	3712	3717	anti-parallel
Strand 3	B	3560	3577	anti-parallel
Strand 4	B	3626	3643	anti-parallel
Strand 5	B	3591	3595	anti-parallel
Strand 6	B	3613	3617	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4051	4052	first strand
Strand 2	B	4119	4120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QWU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWU