Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QWW entry

There are 4 chains in PDB entry 9QWW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 153	ASP 885
B	LEU 29	GLU 222
D	ALA 29	ILE 222
C	ASP 153	ASP 885

There are 59 helices in PDB entry 9QWW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	157	165	Right-handed alpha
Helix 2	AA2	A	218	225	Right-handed alpha
Helix 3	AA3	A	243	247	Right-handed 310
Helix 4	AA4	A	275	279	Right-handed 310
Helix 5	AA5	A	295	301	Right-handed alpha
Helix 6	AA6	A	317	328	Right-handed alpha
Helix 7	AA7	A	339	346	Right-handed alpha
Helix 8	AA8	A	351	356	Right-handed alpha
Helix 9	AA9	A	368	382	Right-handed alpha
Helix 10	AB1	A	391	401	Right-handed alpha
Helix 11	AB2	A	408	412	Right-handed 310
Helix 12	AB3	A	451	460	Right-handed alpha
Helix 13	AB4	A	480	487	Right-handed alpha
Helix 14	AB5	A	488	492	Right-handed 310
Helix 15	AB6	A	511	517	Right-handed alpha
Helix 16	AB7	A	526	531	Right-handed alpha
Helix 17	AB8	A	559	565	Right-handed alpha
Helix 18	AB9	A	582	588	Right-handed alpha
Helix 19	AC1	A	605	611	Right-handed 310
Helix 20	AC2	A	674	678	Right-handed 310
Helix 21	AC3	A	679	685	Right-handed alpha
Helix 22	AC4	A	697	702	Right-handed alpha
Helix 23	AC5	A	707	712	Right-handed 310
Helix 24	AC6	A	738	742	Right-handed 310
Helix 25	AC7	A	759	767	Right-handed 310
Helix 26	AC8	A	832	838	Right-handed 310
Helix 27	AC9	A	850	870	Right-handed alpha
Helix 28	AD1	B	29	34	Right-handed 310
Helix 29	AD2	D	217	222	Right-handed alpha
Helix 30	AD3	C	156	159	Right-handed 310
Helix 31	AD4	C	160	165	Right-handed alpha
Helix 32	AD5	C	190	194	Right-handed 310
Helix 33	AD6	C	218	224	Right-handed alpha
Helix 34	AD7	C	243	247	Right-handed 310
Helix 35	AD8	C	248	252	Right-handed 310
Helix 36	AD9	C	275	279	Right-handed 310
Helix 37	AE1	C	295	300	Right-handed alpha
Helix 38	AE2	C	316	328	Right-handed alpha
Helix 39	AE3	C	339	346	Right-handed alpha
Helix 40	AE4	C	351	356	Right-handed alpha
Helix 41	AE5	C	368	382	Right-handed alpha
Helix 42	AE6	C	392	401	Right-handed alpha
Helix 43	AE7	C	408	412	Right-handed 310
Helix 44	AE8	C	451	460	Right-handed alpha
Helix 45	AE9	C	480	487	Right-handed alpha
Helix 46	AF1	C	488	492	Right-handed 310
Helix 47	AF2	C	511	517	Right-handed alpha
Helix 48	AF3	C	526	533	Right-handed alpha
Helix 49	AF4	C	559	565	Right-handed alpha
Helix 50	AF5	C	582	588	Right-handed alpha
Helix 51	AF6	C	605	611	Right-handed 310
Helix 52	AF7	C	674	678	Right-handed 310
Helix 53	AF8	C	679	685	Right-handed alpha
Helix 54	AF9	C	697	702	Right-handed alpha
Helix 55	AG1	C	707	712	Right-handed 310
Helix 56	AG2	C	738	742	Right-handed 310
Helix 57	AG3	C	761	767	Right-handed alpha
Helix 58	AG4	C	832	838	Right-handed 310
Helix 59	AG5	C	850	870	Right-handed alpha

There are 22 sheets in PDB entry 9QWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	289	291	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	261	264	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	520	522	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	552	first strand
Strand 2	A	573	578	parallel
Strand 3	A	594	598	parallel
Strand 4	A	617	621	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	627	first strand
Strand 2	A	646	648	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	696	first strand
Strand 2	A	723	725	parallel
Strand 3	A	750	752	parallel
Strand 4	A	774	776	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	780	781	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	806	808	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	799	first strand
Strand 2	A	819	823	parallel
Strand 3	A	843	847	parallel
Strand 4	A	881	882	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	162	anti-parallel
Strand 3	B	84	88	anti-parallel
Strand 4	B	207	208	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	193	195	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	204	208	anti-parallel
Strand 4	D	83	90	anti-parallel
Strand 5	D	157	163	anti-parallel
Strand 6	D	168	173	anti-parallel
Strand 7	D	176	177	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	71	first strand
Strand 2	D	193	198	anti-parallel
Strand 3	D	97	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	128	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	143	145	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	261	264	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	C	570	571	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	552	first strand
Strand 2	C	573	578	parallel
Strand 3	C	594	598	parallel
Strand 4	C	617	621	parallel
Strand 5	C	642	643	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	625	627	first strand
Strand 2	C	646	648	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	696	first strand
Strand 2	C	720	725	parallel
Strand 3	C	748	752	parallel
Strand 4	C	772	776	parallel
Strand 5	C	796	799	parallel
Strand 6	C	819	823	parallel
Strand 7	C	843	847	parallel
Strand 8	C	881	882	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	757	first strand
Strand 2	C	780	781	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	786	first strand
Strand 2	C	806	808	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QWW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QWW