Analysis of interatomic Contacts of Structural Units in PDB entry:
9QX1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QX1 entry

There are 4 chains in PDB entry 9QX1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2443	LEU 3383
C	ASP 263	TYR 515
B	ASN 2443	LEU 3383
D	ASP 263	TYR 515

There are106 helices in PDB entry 9QX1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2443	2471	Right-handed alpha
Helix 2	AA2	A	2474	2493	Right-handed alpha
Helix 3	AA3	A	2495	2506	Right-handed alpha
Helix 4	AA4	A	2506	2517	Right-handed alpha
Helix 5	AA5	A	2518	2535	Right-handed alpha
Helix 6	AA6	A	2541	2553	Right-handed alpha
Helix 7	AA7	A	2556	2567	Right-handed alpha
Helix 8	AA8	A	2571	2589	Right-handed alpha
Helix 9	AA9	A	2590	2604	Right-handed alpha
Helix 10	AB1	A	2604	2609	Right-handed alpha
Helix 11	AB2	A	2616	2631	Right-handed alpha
Helix 12	AB3	A	2632	2657	Right-handed alpha
Helix 13	AB4	A	2658	2669	Right-handed alpha
Helix 14	AB5	A	2672	2676	Right-handed 310
Helix 15	AB6	A	2876	2911	Right-handed alpha
Helix 16	AB7	A	2928	2938	Right-handed alpha
Helix 17	AB8	A	2950	2987	Right-handed alpha
Helix 18	AB9	A	3000	3005	Right-handed alpha
Helix 19	AC1	A	3006	3009	Right-handed 310
Helix 20	AC2	A	3010	3029	Right-handed alpha
Helix 21	AC3	A	3031	3040	Right-handed alpha
Helix 22	AC4	A	3043	3055	Right-handed alpha
Helix 23	AC5	A	3058	3070	Right-handed alpha
Helix 24	AC6	A	3074	3087	Right-handed alpha
Helix 25	AC7	A	3091	3098	Right-handed alpha
Helix 26	AC8	A	3105	3121	Right-handed alpha
Helix 27	AC9	A	3122	3139	Right-handed alpha
Helix 28	AD1	A	3140	3143	Right-handed 310
Helix 29	AD2	A	3144	3149	Right-handed alpha
Helix 30	AD3	A	3155	3165	Right-handed alpha
Helix 31	AD4	A	3168	3172	Right-handed 310
Helix 32	AD5	A	3189	3191	Right-handed 310
Helix 33	AD6	A	3192	3198	Right-handed alpha
Helix 34	AD7	A	3202	3218	Right-handed alpha
Helix 35	AD8	A	3222	3234	Right-handed alpha
Helix 36	AD9	A	3235	3239	Right-handed 310
Helix 37	AE1	A	3245	3257	Right-handed alpha
Helix 38	AE2	A	3259	3269	Right-handed alpha
Helix 39	AE3	A	3270	3285	Right-handed alpha
Helix 40	AE4	A	3286	3289	Right-handed 310
Helix 41	AE5	A	3292	3315	Right-handed alpha
Helix 42	AE6	A	3317	3327	Right-handed alpha
Helix 43	AE7	A	3331	3344	Right-handed alpha
Helix 44	AE8	A	3350	3368	Right-handed alpha
Helix 45	AE9	A	3371	3383	Right-handed alpha
Helix 46	AF1	C	319	324	Right-handed alpha
Helix 47	AF2	C	325	333	Right-handed alpha
Helix 48	AF3	C	336	349	Right-handed alpha
Helix 49	AF4	C	399	403	Right-handed 310
Helix 50	AF5	C	425	446	Right-handed alpha
Helix 51	AF6	C	459	469	Right-handed alpha
Helix 52	AF7	C	470	472	Right-handed 310
Helix 53	AF8	C	496	501	Right-handed alpha
Helix 54	AF9	B	2444	2471	Right-handed alpha
Helix 55	AG1	B	2474	2493	Right-handed alpha
Helix 56	AG2	B	2495	2506	Right-handed alpha
Helix 57	AG3	B	2506	2517	Right-handed alpha
Helix 58	AG4	B	2518	2535	Right-handed alpha
Helix 59	AG5	B	2541	2553	Right-handed alpha
Helix 60	AG6	B	2556	2567	Right-handed alpha
Helix 61	AG7	B	2571	2589	Right-handed alpha
Helix 62	AG8	B	2590	2604	Right-handed alpha
Helix 63	AG9	B	2604	2609	Right-handed alpha
Helix 64	AH1	B	2616	2631	Right-handed alpha
Helix 65	AH2	B	2632	2657	Right-handed alpha
Helix 66	AH3	B	2658	2669	Right-handed alpha
Helix 67	AH4	B	2672	2676	Right-handed 310
Helix 68	AH5	B	2876	2911	Right-handed alpha
Helix 69	AH6	B	2928	2938	Right-handed alpha
Helix 70	AH7	B	2950	2987	Right-handed alpha
Helix 71	AH8	B	3000	3005	Right-handed alpha
Helix 72	AH9	B	3006	3009	Right-handed 310
Helix 73	AI1	B	3010	3029	Right-handed alpha
Helix 74	AI2	B	3031	3041	Right-handed alpha
Helix 75	AI3	B	3043	3055	Right-handed alpha
Helix 76	AI4	B	3058	3070	Right-handed alpha
Helix 77	AI5	B	3074	3087	Right-handed alpha
Helix 78	AI6	B	3091	3098	Right-handed alpha
Helix 79	AI7	B	3105	3121	Right-handed alpha
Helix 80	AI8	B	3122	3139	Right-handed alpha
Helix 81	AI9	B	3140	3143	Right-handed 310
Helix 82	AJ1	B	3144	3149	Right-handed alpha
Helix 83	AJ2	B	3155	3165	Right-handed alpha
Helix 84	AJ3	B	3168	3172	Right-handed 310
Helix 85	AJ4	B	3189	3191	Right-handed 310
Helix 86	AJ5	B	3192	3198	Right-handed alpha
Helix 87	AJ6	B	3202	3218	Right-handed alpha
Helix 88	AJ7	B	3222	3234	Right-handed alpha
Helix 89	AJ8	B	3235	3239	Right-handed 310
Helix 90	AJ9	B	3245	3257	Right-handed alpha
Helix 91	AK1	B	3259	3269	Right-handed alpha
Helix 92	AK2	B	3270	3285	Right-handed alpha
Helix 93	AK3	B	3286	3289	Right-handed 310
Helix 94	AK4	B	3292	3315	Right-handed alpha
Helix 95	AK5	B	3317	3327	Right-handed alpha
Helix 96	AK6	B	3331	3344	Right-handed alpha
Helix 97	AK7	B	3350	3368	Right-handed alpha
Helix 98	AK8	B	3371	3383	Right-handed alpha
Helix 99	AK9	D	319	324	Right-handed alpha
Helix 100	AL1	D	325	333	Right-handed alpha
Helix 101	AL2	D	336	349	Right-handed alpha
Helix 102	AL3	D	399	403	Right-handed 310
Helix 103	AL4	D	425	446	Right-handed alpha
Helix 104	AL5	D	459	469	Right-handed alpha
Helix 105	AL6	D	470	472	Right-handed 310
Helix 106	AL7	D	496	501	Right-handed alpha

There are 6 sheets in PDB entry 9QX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2921	2925	first strand
Strand 2	D	389	395	anti-parallel
Strand 3	D	270	272	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2921	2925	first strand
Strand 2	D	389	395	anti-parallel
Strand 3	D	276	277	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2939	2941	first strand
Strand 2	D	266	268	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	268	first strand
Strand 2	B	2939	2941	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	C	276	277	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	389	395	anti-parallel
Strand 3	B	2921	2925	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QX1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QX1