Analysis of interatomic Contacts of Structural Units in PDB entry:
9QX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QX5 entry

There is 1 chain in PDB entry 9QX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 657CYS 2438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9QX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
657 674Right-handed alpha
Helix 2
AA2
A
684 686Right-handed 310
Helix 3
AA3
A
687 696Right-handed alpha
Helix 4
AA4
A
697 699Right-handed 310
Helix 5
AA5
A
700 723Right-handed alpha
Helix 6
AA6
A
731 741Right-handed alpha
Helix 7
AA7
A
744 749Right-handed 310
Helix 8
AA8
A
751 773Right-handed alpha
Helix 9
AA9
A
775 785Right-handed alpha
Helix 10
AB1
A
797 809Right-handed alpha
Helix 11
AB2
A
810 814Right-handed 310
Helix 12
AB3
A
819 823Right-handed 310
Helix 13
AB4
A
826 838Right-handed alpha
Helix 14
AB5
A
843 858Right-handed alpha
Helix 15
AB6
A
861 879Right-handed alpha
Helix 16
AB7
A
892 907Right-handed alpha
Helix 17
AB8
A
908 910Right-handed 310
Helix 18
AB9
A
915 923Right-handed alpha
Helix 19
AC1
A
925 931Right-handed alpha
Helix 20
AC2
A
934 939Right-handed alpha
Helix 21
AC3
A
943 965Right-handed alpha
Helix 22
AC4
A
970 988Right-handed alpha
Helix 23
AC5
A
989 994Right-handed 310
Helix 24
AC6
A
1000 1008Right-handed alpha
Helix 25
AC7
A
1008 1017Right-handed alpha
Helix 26
AC8
A
1018 1025Right-handed alpha
Helix 27
AC9
A
1026 1042Right-handed alpha
Helix 28
AD1
A
1042 1052Right-handed alpha
Helix 29
AD2
A
1084 1096Right-handed alpha
Helix 30
AD3
A
1097 1121Right-handed alpha
Helix 31
AD4
A
1122 1127Right-handed alpha
Helix 32
AD5
A
1138 1162Right-handed alpha
Helix 33
AD6
A
1167 1176Right-handed alpha
Helix 34
AD7
A
1179 1187Right-handed alpha
Helix 35
AD8
A
1319 1321Right-handed 310
Helix 36
AD9
A
1322 1339Right-handed alpha
Helix 37
AE1
A
1340 1358Right-handed alpha
Helix 38
AE2
A
1361 1371Right-handed alpha
Helix 39
AE3
A
1372 1373Right-handed 310
Helix 40
AE4
A
1374 1378Right-handed 310
Helix 41
AE5
A
1454 1461Right-handed alpha
Helix 42
AE6
A
1942 1959Right-handed alpha
Helix 43
AE7
A
1959 1968Right-handed alpha
Helix 44
AE8
A
1977 1992Right-handed alpha
Helix 45
AE9
A
1996 2013Right-handed alpha
Helix 46
AF1
A
2014 2016Right-handed 310
Helix 47
AF2
A
2018 2022Right-handed 310
Helix 48
AF3
A
2024 2038Right-handed alpha
Helix 49
AF4
A
2039 2043Right-handed 310
Helix 50
AF5
A
2044 2057Right-handed alpha
Helix 51
AF6
A
2058 2073Right-handed alpha
Helix 52
AF7
A
2078 2096Right-handed alpha
Helix 53
AF8
A
2099 2113Right-handed alpha
Helix 54
AF9
A
2116 2118Right-handed 310
Helix 55
AG1
A
2119 2148Right-handed alpha
Helix 56
AG2
A
2152 2154Right-handed 310
Helix 57
AG3
A
2165 2169Right-handed 310
Helix 58
AG4
A
2177 2188Right-handed alpha
Helix 59
AG5
A
2198 2215Right-handed alpha
Helix 60
AG6
A
2227 2241Right-handed alpha
Helix 61
AG7
A
2244 2257Right-handed alpha
Helix 62
AG8
A
2270 2292Right-handed alpha
Helix 63
AG9
A
2293 2296Right-handed 310
Helix 64
AH1
A
2298 2316Right-handed alpha
Helix 65
AH2
A
2316 2335Right-handed alpha
Helix 66
AH3
A
2375 2399Right-handed alpha
Helix 67
AH4
A
2407 2421Right-handed alpha
Helix 68
AH5
A
2428 2438Right-handed alpha
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There are 9 sheets in PDB entry 9QX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1379 1381first strand
Strand 2
A
1708 1715parallel
Strand 3
A
1698 1705anti-parallel
Strand 4
A
1687 1692anti-parallel
Strand 5
A
1678 1684anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1387 1393first strand
Strand 2
A
1746 1751anti-parallel
Strand 3
A
1734 1739anti-parallel
Strand 4
A
1722 1727anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1421 1425first strand
Strand 2
A
1431 1435anti-parallel
Strand 3
A
1443 1449anti-parallel
Strand 4
A
1462 1468anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1475 1479first strand
Strand 2
A
1482 1486anti-parallel
Strand 3
A
1490 1496anti-parallel
Strand 4
A
1502 1509anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1524 1529first strand
Strand 2
A
1542 1547anti-parallel
Strand 3
A
1550 1555anti-parallel
Strand 4
A
1565 1568anti-parallel
Strand 5
A
1612 1614parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1576 1581first strand
Strand 2
A
1587 1592anti-parallel
Strand 3
A
1598 1603anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1630 1636first strand
Strand 2
A
1641 1646anti-parallel
Strand 3
A
1650 1654anti-parallel
Strand 4
A
1669 1671anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1766 1769first strand
Strand 2
A
1936 1939anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2173 2175first strand
Strand 2
A
2156 2159anti-parallel
Strand 3
A
2189 2190anti-parallel
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