Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QXL entry

There are 4 chains in PDB entry 9QXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 407LEU 678
B
 GLU 151VAL 394
C
 ASN 15ASN 339
E
 ALA 23PHE 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9QXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
408 413Right-handed 310
Helix 2
AA2
A
420 452Right-handed alpha
Helix 3
AA3
A
457 481Right-handed alpha
Helix 4
AA4
A
486 521Right-handed alpha
Helix 5
AA5
A
525 551Right-handed alpha
Helix 6
AA6
A
552 556Right-handed 310
Helix 7
AA7
A
566 570Right-handed 310
Helix 8
AA8
A
571 600Right-handed alpha
Helix 9
AA9
A
610 627Right-handed alpha
Helix 10
AB1
A
628 630Right-handed 310
Helix 11
AB2
A
631 640Right-handed alpha
Helix 12
AB3
A
642 653Right-handed alpha
Helix 13
AB4
A
655 665Right-handed alpha
Helix 14
AB5
A
668 678Right-handed alpha
Helix 15
AB6
B
152 179Right-handed alpha
Helix 16
AB7
B
193 206Right-handed alpha
Helix 17
AB8
B
263 278Right-handed alpha
Helix 18
AB9
B
293 304Right-handed alpha
Helix 19
AC1
B
307 311Right-handed 310
Helix 20
AC2
B
312 318Right-handed 310
Helix 21
AC3
B
331 350Right-handed alpha
Helix 22
AC4
B
370 389Right-handed alpha
Helix 23
AC5
C
16 24Right-handed alpha
Helix 24
AC6
C
28 33Right-handed alpha
Helix 25
AC7
C
34 36Right-handed 310
Helix 26
AC8
E
34 39Right-handed alpha
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There are 8 sheets in PDB entry 9QXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
219 224anti-parallel
Strand 3
B
227 233anti-parallel
Strand 4
B
181 188parallel
Strand 5
B
253 259parallel
Strand 6
B
286 292parallel
Strand 7
B
359 363parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 50first strand
Strand 2
C
335 338anti-parallel
Strand 3
C
326 330anti-parallel
Strand 4
C
314 319anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 62first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
77 80anti-parallel
Strand 4
C
90 93anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 104first strand
Strand 2
C
110 115anti-parallel
Strand 3
C
119 124anti-parallel
Strand 4
C
133 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 151first strand
Strand 2
C
155 160anti-parallel
Strand 3
C
164 169anti-parallel
Strand 4
C
175 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 191first strand
Strand 2
C
197 202anti-parallel
Strand 3
C
206 211anti-parallel
Strand 4
C
217 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 231first strand
Strand 2
C
239 244anti-parallel
Strand 3
C
248 253anti-parallel
Strand 4
C
258 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 276first strand
Strand 2
C
283 287anti-parallel
Strand 3
C
292 297anti-parallel
Strand 4
C
303 308anti-parallel
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