Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QXR entry

There are 8 chains in PDB entry 9QXR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 40	THR 234
D	SER 40	THR 234
E	MET 1	GLU 498
J	MET 1	GLY 320
A	MET 1	ALA 1095
B	MET 1	ALA 1095
P	A 1	T 60
Q	A 1	T 60

There are117 helices in PDB entry 9QXR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	45	59	Right-handed alpha
Helix 2	AA2	C	66	76	Right-handed alpha
Helix 3	AA3	C	76	85	Right-handed alpha
Helix 4	AA4	C	113	117	Right-handed 310
Helix 5	AA5	C	126	148	Right-handed alpha
Helix 6	AA6	C	160	170	Right-handed alpha
Helix 7	AA7	C	174	193	Right-handed alpha
Helix 8	AA8	C	209	214	Right-handed alpha
Helix 9	AA9	C	215	234	Right-handed alpha
Helix 10	AB1	D	45	59	Right-handed alpha
Helix 11	AB2	D	66	76	Right-handed alpha
Helix 12	AB3	D	76	85	Right-handed alpha
Helix 13	AB4	D	126	148	Right-handed alpha
Helix 14	AB5	D	158	170	Right-handed alpha
Helix 15	AB6	D	174	193	Right-handed alpha
Helix 16	AB7	D	207	213	Right-handed 310
Helix 17	AB8	D	215	234	Right-handed alpha
Helix 18	AB9	E	3	19	Right-handed alpha
Helix 19	AC1	E	19	27	Right-handed alpha
Helix 20	AC2	E	29	43	Right-handed alpha
Helix 21	AC3	E	50	64	Right-handed alpha
Helix 22	AC4	E	67	71	Right-handed 310
Helix 23	AC5	E	76	91	Right-handed alpha
Helix 24	AC6	E	104	116	Right-handed alpha
Helix 25	AC7	E	125	144	Right-handed alpha
Helix 26	AC8	E	146	171	Right-handed alpha
Helix 27	AC9	E	177	193	Right-handed alpha
Helix 28	AD1	E	194	197	Right-handed 310
Helix 29	AD2	E	198	220	Right-handed alpha
Helix 30	AD3	E	224	233	Right-handed alpha
Helix 31	AD4	E	240	255	Right-handed alpha
Helix 32	AD5	E	256	273	Right-handed alpha
Helix 33	AD6	E	275	280	Right-handed alpha
Helix 34	AD7	E	281	290	Right-handed alpha
Helix 35	AD8	E	290	322	Right-handed alpha
Helix 36	AD9	E	326	342	Right-handed alpha
Helix 37	AE1	E	348	352	Right-handed 310
Helix 38	AE2	E	368	370	Right-handed 310
Helix 39	AE3	E	390	394	Right-handed 310
Helix 40	AE4	E	398	406	Right-handed alpha
Helix 41	AE5	E	409	425	Right-handed alpha
Helix 42	AE6	E	429	437	Right-handed alpha
Helix 43	AE7	E	441	456	Right-handed alpha
Helix 44	AE8	E	488	495	Right-handed alpha
Helix 45	AE9	J	2	19	Right-handed alpha
Helix 46	AF1	J	19	27	Right-handed alpha
Helix 47	AF2	J	29	43	Right-handed alpha
Helix 48	AF3	J	50	64	Right-handed alpha
Helix 49	AF4	J	67	71	Right-handed 310
Helix 50	AF5	J	76	91	Right-handed alpha
Helix 51	AF6	J	104	117	Right-handed alpha
Helix 52	AF7	J	125	144	Right-handed alpha
Helix 53	AF8	J	146	170	Right-handed alpha
Helix 54	AF9	J	177	193	Right-handed alpha
Helix 55	AG1	J	194	197	Right-handed 310
Helix 56	AG2	J	198	219	Right-handed alpha
Helix 57	AG3	J	223	232	Right-handed alpha
Helix 58	AG4	J	240	255	Right-handed alpha
Helix 59	AG5	J	256	273	Right-handed alpha
Helix 60	AG6	J	275	280	Right-handed alpha
Helix 61	AG7	J	281	290	Right-handed alpha
Helix 62	AG8	J	290	318	Right-handed alpha
Helix 63	AG9	A	2	6	Right-handed alpha
Helix 64	AH1	A	48	61	Right-handed alpha
Helix 65	AH2	A	67	72	Right-handed alpha
Helix 66	AH3	A	79	86	Right-handed alpha
Helix 67	AH4	A	135	139	Right-handed 310
Helix 68	AH5	A	152	163	Right-handed alpha
Helix 69	AH6	A	164	175	Right-handed alpha
Helix 70	AH7	A	183	196	Right-handed alpha
Helix 71	AH8	A	199	210	Right-handed alpha
Helix 72	AH9	A	216	224	Right-handed alpha
Helix 73	AI1	A	231	241	Right-handed alpha
Helix 74	AI2	A	242	343	Right-handed alpha
Helix 75	AI3	A	690	742	Right-handed alpha
Helix 76	AI4	A	746	755	Right-handed alpha
Helix 77	AI5	A	764	766	Right-handed 310
Helix 78	AI6	A	767	808	Right-handed alpha
Helix 79	AI7	A	818	820	Right-handed 310
Helix 80	AI8	A	821	835	Right-handed alpha
Helix 81	AI9	A	835	851	Right-handed alpha
Helix 82	AJ1	A	853	881	Right-handed alpha
Helix 83	AJ2	A	901	918	Right-handed alpha
Helix 84	AJ3	A	926	944	Right-handed alpha
Helix 85	AJ4	A	947	955	Right-handed alpha
Helix 86	AJ5	A	956	958	Right-handed 310
Helix 87	AJ6	A	985	1006	Right-handed alpha
Helix 88	AJ7	A	1028	1042	Right-handed alpha
Helix 89	AJ8	A	1054	1062	Right-handed alpha
Helix 90	AJ9	A	1082	1093	Right-handed alpha
Helix 91	AK1	A	1094	1095	Right-handed 310
Helix 92	AK2	B	1	7	Right-handed 310
Helix 93	AK3	B	48	61	Right-handed alpha
Helix 94	AK4	B	68	72	Right-handed 310
Helix 95	AK5	B	79	86	Right-handed alpha
Helix 96	AK6	B	152	163	Right-handed alpha
Helix 97	AK7	B	164	175	Right-handed alpha
Helix 98	AK8	B	183	196	Right-handed alpha
Helix 99	AK9	B	200	208	Right-handed alpha
Helix 100	AL1	B	216	222	Right-handed alpha
Helix 101	AL2	B	231	341	Right-handed alpha
Helix 102	AL3	B	690	742	Right-handed alpha
Helix 103	AL4	B	746	757	Right-handed alpha
Helix 104	AL5	B	761	765	Right-handed 310
Helix 105	AL6	B	767	805	Right-handed alpha
Helix 106	AL7	B	810	815	Right-handed alpha
Helix 107	AL8	B	818	820	Right-handed 310
Helix 108	AL9	B	821	836	Right-handed alpha
Helix 109	AM1	B	836	851	Right-handed alpha
Helix 110	AM2	B	853	883	Right-handed alpha
Helix 111	AM3	B	901	918	Right-handed alpha
Helix 112	AM4	B	924	944	Right-handed alpha
Helix 113	AM5	B	947	955	Right-handed alpha
Helix 114	AM6	B	956	958	Right-handed 310
Helix 115	AM7	B	987	1005	Right-handed alpha
Helix 116	AM8	B	1028	1043	Right-handed alpha
Helix 117	AM9	B	1054	1062	Right-handed alpha

There are 13 sheets in PDB entry 9QXR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	E	372	373	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	100	103	anti-parallel
Strand 3	E	94	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	471	first strand
Strand 2	E	477	484	anti-parallel
Strand 3	B	1074	1084	anti-parallel
Strand 4	B	1064	1071	anti-parallel
Strand 5	B	39	42	parallel
Strand 6	B	1045	1050	parallel
Strand 7	B	1017	1020	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	100	103	anti-parallel
Strand 3	J	94	97	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	23	anti-parallel
Strand 3	A	106	116	anti-parallel
Strand 4	A	119	129	anti-parallel
Strand 5	A	140	146	anti-parallel
Strand 6	A	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1020	first strand
Strand 2	A	1045	1050	parallel
Strand 3	A	39	42	parallel
Strand 4	A	1064	1071	parallel
Strand 5	A	1074	1081	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	898	first strand
Strand 2	A	960	968	anti-parallel
Strand 3	A	974	978	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	106	116	anti-parallel
Strand 4	B	119	129	anti-parallel
Strand 5	B	140	146	anti-parallel
Strand 6	B	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	898	first strand
Strand 2	B	960	968	anti-parallel
Strand 3	B	974	978	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QXR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXR