Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QXS entry

There are 12 chains in PDB entry 9QXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 40	THR 234
D	SER 40	THR 234
E	MET 1	GLU 498
A	MET 1	ALA 1095
B	MET 1	ALA 1095
H	SER 40	THR 234
I	SER 40	THR 234
j	MET 1	GLU 498
F	MET 1	ALA 1095
G	MET 1	ALA 1095
P	A 1	T 60
Q	A 1	T 60

There are200 helices in PDB entry 9QXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	45	59	Right-handed alpha
Helix 2	AA2	C	66	76	Right-handed alpha
Helix 3	AA3	C	76	85	Right-handed alpha
Helix 4	AA4	C	113	117	Right-handed 310
Helix 5	AA5	C	126	148	Right-handed alpha
Helix 6	AA6	C	158	170	Right-handed alpha
Helix 7	AA7	C	174	191	Right-handed alpha
Helix 8	AA8	C	209	214	Right-handed alpha
Helix 9	AA9	C	215	234	Right-handed alpha
Helix 10	AB1	D	45	59	Right-handed alpha
Helix 11	AB2	D	66	76	Right-handed alpha
Helix 12	AB3	D	76	85	Right-handed alpha
Helix 13	AB4	D	126	148	Right-handed alpha
Helix 14	AB5	D	158	170	Right-handed alpha
Helix 15	AB6	D	174	192	Right-handed alpha
Helix 16	AB7	D	207	213	Right-handed 310
Helix 17	AB8	D	215	234	Right-handed alpha
Helix 18	AB9	E	3	19	Right-handed alpha
Helix 19	AC1	E	19	27	Right-handed alpha
Helix 20	AC2	E	29	43	Right-handed alpha
Helix 21	AC3	E	50	63	Right-handed alpha
Helix 22	AC4	E	67	71	Right-handed 310
Helix 23	AC5	E	76	91	Right-handed alpha
Helix 24	AC6	E	104	116	Right-handed alpha
Helix 25	AC7	E	127	144	Right-handed alpha
Helix 26	AC8	E	146	170	Right-handed alpha
Helix 27	AC9	E	177	193	Right-handed alpha
Helix 28	AD1	E	194	197	Right-handed 310
Helix 29	AD2	E	198	220	Right-handed alpha
Helix 30	AD3	E	224	233	Right-handed alpha
Helix 31	AD4	E	240	255	Right-handed alpha
Helix 32	AD5	E	256	273	Right-handed alpha
Helix 33	AD6	E	275	280	Right-handed alpha
Helix 34	AD7	E	281	290	Right-handed alpha
Helix 35	AD8	E	290	315	Right-handed alpha
Helix 36	AD9	E	317	322	Right-handed alpha
Helix 37	AE1	E	326	340	Right-handed alpha
Helix 38	AE2	E	348	352	Right-handed 310
Helix 39	AE3	E	368	370	Right-handed 310
Helix 40	AE4	E	390	394	Right-handed 310
Helix 41	AE5	E	398	406	Right-handed alpha
Helix 42	AE6	E	409	425	Right-handed alpha
Helix 43	AE7	E	430	437	Right-handed alpha
Helix 44	AE8	E	441	456	Right-handed alpha
Helix 45	AE9	E	488	495	Right-handed alpha
Helix 46	AF1	A	2	6	Right-handed alpha
Helix 47	AF2	A	48	61	Right-handed alpha
Helix 48	AF3	A	67	72	Right-handed alpha
Helix 49	AF4	A	79	85	Right-handed alpha
Helix 50	AF5	A	152	163	Right-handed alpha
Helix 51	AF6	A	164	175	Right-handed alpha
Helix 52	AF7	A	183	196	Right-handed alpha
Helix 53	AF8	A	199	209	Right-handed alpha
Helix 54	AF9	A	216	224	Right-handed alpha
Helix 55	AG1	A	231	241	Right-handed alpha
Helix 56	AG2	A	242	343	Right-handed alpha
Helix 57	AG3	A	690	742	Right-handed alpha
Helix 58	AG4	A	746	754	Right-handed alpha
Helix 59	AG5	A	764	766	Right-handed 310
Helix 60	AG6	A	767	808	Right-handed alpha
Helix 61	AG7	A	818	820	Right-handed 310
Helix 62	AG8	A	821	835	Right-handed alpha
Helix 63	AG9	A	835	851	Right-handed alpha
Helix 64	AH1	A	853	882	Right-handed alpha
Helix 65	AH2	A	901	918	Right-handed alpha
Helix 66	AH3	A	924	944	Right-handed alpha
Helix 67	AH4	A	947	955	Right-handed alpha
Helix 68	AH5	A	956	958	Right-handed 310
Helix 69	AH6	A	985	1005	Right-handed alpha
Helix 70	AH7	A	1028	1042	Right-handed alpha
Helix 71	AH8	A	1054	1060	Right-handed alpha
Helix 72	AH9	A	1082	1093	Right-handed alpha
Helix 73	AI1	A	1094	1095	Right-handed 310
Helix 74	AI2	B	1	7	Right-handed 310
Helix 75	AI3	B	48	59	Right-handed alpha
Helix 76	AI4	B	67	72	Right-handed 310
Helix 77	AI5	B	79	85	Right-handed alpha
Helix 78	AI6	B	135	139	Right-handed 310
Helix 79	AI7	B	152	163	Right-handed alpha
Helix 80	AI8	B	164	175	Right-handed alpha
Helix 81	AI9	B	183	196	Right-handed alpha
Helix 82	AJ1	B	200	211	Right-handed alpha
Helix 83	AJ2	B	217	225	Right-handed alpha
Helix 84	AJ3	B	231	343	Right-handed alpha
Helix 85	AJ4	B	690	742	Right-handed alpha
Helix 86	AJ5	B	746	757	Right-handed alpha
Helix 87	AJ6	B	761	765	Right-handed 310
Helix 88	AJ7	B	767	806	Right-handed alpha
Helix 89	AJ8	B	810	815	Right-handed alpha
Helix 90	AJ9	B	818	820	Right-handed 310
Helix 91	AK1	B	821	836	Right-handed alpha
Helix 92	AK2	B	836	851	Right-handed alpha
Helix 93	AK3	B	853	882	Right-handed alpha
Helix 94	AK4	B	901	918	Right-handed alpha
Helix 95	AK5	B	924	944	Right-handed alpha
Helix 96	AK6	B	947	955	Right-handed alpha
Helix 97	AK7	B	956	958	Right-handed 310
Helix 98	AK8	B	987	1006	Right-handed alpha
Helix 99	AK9	B	1028	1043	Right-handed alpha
Helix 100	AL1	B	1054	1062	Right-handed alpha
Helix 101	AL2	H	45	59	Right-handed alpha
Helix 102	AL3	H	66	76	Right-handed alpha
Helix 103	AL4	H	76	85	Right-handed alpha
Helix 104	AL5	H	113	117	Right-handed 310
Helix 105	AL6	H	126	148	Right-handed alpha
Helix 106	AL7	H	158	169	Right-handed alpha
Helix 107	AL8	H	174	191	Right-handed alpha
Helix 108	AL9	H	209	214	Right-handed alpha
Helix 109	AM1	H	215	234	Right-handed alpha
Helix 110	AM2	I	45	59	Right-handed alpha
Helix 111	AM3	I	66	76	Right-handed alpha
Helix 112	AM4	I	76	85	Right-handed alpha
Helix 113	AM5	I	126	148	Right-handed alpha
Helix 114	AM6	I	158	170	Right-handed alpha
Helix 115	AM7	I	174	193	Right-handed alpha
Helix 116	AM8	I	207	213	Right-handed 310
Helix 117	AM9	I	215	234	Right-handed alpha
Helix 118	AN1	j	3	19	Right-handed alpha
Helix 119	AN2	j	19	25	Right-handed alpha
Helix 120	AN3	j	29	42	Right-handed alpha
Helix 121	AN4	j	50	64	Right-handed alpha
Helix 122	AN5	j	65	71	Right-handed 310
Helix 123	AN6	j	76	91	Right-handed alpha
Helix 124	AN7	j	104	118	Right-handed alpha
Helix 125	AN8	j	125	144	Right-handed alpha
Helix 126	AN9	j	146	170	Right-handed alpha
Helix 127	AO1	j	177	193	Right-handed alpha
Helix 128	AO2	j	194	197	Right-handed 310
Helix 129	AO3	j	198	210	Right-handed alpha
Helix 130	AO4	j	210	218	Right-handed alpha
Helix 131	AO5	j	224	232	Right-handed alpha
Helix 132	AO6	j	240	255	Right-handed alpha
Helix 133	AO7	j	256	271	Right-handed alpha
Helix 134	AO8	j	275	280	Right-handed alpha
Helix 135	AO9	j	281	288	Right-handed alpha
Helix 136	AP1	j	290	317	Right-handed alpha
Helix 137	AP2	j	317	322	Right-handed alpha
Helix 138	AP3	j	326	340	Right-handed alpha
Helix 139	AP4	j	348	352	Right-handed 310
Helix 140	AP5	j	368	370	Right-handed 310
Helix 141	AP6	j	398	406	Right-handed alpha
Helix 142	AP7	j	409	425	Right-handed alpha
Helix 143	AP8	j	429	437	Right-handed alpha
Helix 144	AP9	j	441	456	Right-handed alpha
Helix 145	AQ1	j	488	494	Right-handed alpha
Helix 146	AQ2	F	2	6	Right-handed alpha
Helix 147	AQ3	F	48	61	Right-handed alpha
Helix 148	AQ4	F	67	72	Right-handed alpha
Helix 149	AQ5	F	79	85	Right-handed alpha
Helix 150	AQ6	F	152	163	Right-handed alpha
Helix 151	AQ7	F	164	175	Right-handed alpha
Helix 152	AQ8	F	183	196	Right-handed alpha
Helix 153	AQ9	F	199	209	Right-handed alpha
Helix 154	AR1	F	216	224	Right-handed alpha
Helix 155	AR2	F	231	241	Right-handed alpha
Helix 156	AR3	F	242	343	Right-handed alpha
Helix 157	AR4	F	690	742	Right-handed alpha
Helix 158	AR5	F	746	755	Right-handed alpha
Helix 159	AR6	F	764	766	Right-handed 310
Helix 160	AR7	F	767	808	Right-handed alpha
Helix 161	AR8	F	818	820	Right-handed 310
Helix 162	AR9	F	821	835	Right-handed alpha
Helix 163	AS1	F	835	851	Right-handed alpha
Helix 164	AS2	F	853	882	Right-handed alpha
Helix 165	AS3	F	901	918	Right-handed alpha
Helix 166	AS4	F	924	944	Right-handed alpha
Helix 167	AS5	F	947	955	Right-handed alpha
Helix 168	AS6	F	956	958	Right-handed 310
Helix 169	AS7	F	985	1005	Right-handed alpha
Helix 170	AS8	F	1028	1042	Right-handed alpha
Helix 171	AS9	F	1054	1060	Right-handed alpha
Helix 172	AT1	F	1082	1093	Right-handed alpha
Helix 173	AT2	F	1094	1095	Right-handed 310
Helix 174	AT3	G	1	7	Right-handed 310
Helix 175	AT4	G	48	59	Right-handed alpha
Helix 176	AT5	G	67	72	Right-handed 310
Helix 177	AT6	G	79	86	Right-handed alpha
Helix 178	AT7	G	135	139	Right-handed 310
Helix 179	AT8	G	152	163	Right-handed alpha
Helix 180	AT9	G	164	175	Right-handed alpha
Helix 181	AU1	G	183	196	Right-handed alpha
Helix 182	AU2	G	200	211	Right-handed alpha
Helix 183	AU3	G	216	225	Right-handed alpha
Helix 184	AU4	G	231	343	Right-handed alpha
Helix 185	AU5	G	690	742	Right-handed alpha
Helix 186	AU6	G	746	757	Right-handed alpha
Helix 187	AU7	G	761	765	Right-handed 310
Helix 188	AU8	G	767	806	Right-handed alpha
Helix 189	AU9	G	810	815	Right-handed alpha
Helix 190	AV1	G	818	820	Right-handed 310
Helix 191	AV2	G	821	836	Right-handed alpha
Helix 192	AV3	G	836	851	Right-handed alpha
Helix 193	AV4	G	853	882	Right-handed alpha
Helix 194	AV5	G	901	918	Right-handed alpha
Helix 195	AV6	G	924	944	Right-handed alpha
Helix 196	AV7	G	947	955	Right-handed alpha
Helix 197	AV8	G	956	958	Right-handed 310
Helix 198	AV9	G	987	1006	Right-handed alpha
Helix 199	AW1	G	1028	1043	Right-handed alpha
Helix 200	AW2	G	1054	1062	Right-handed alpha

There are 26 sheets in PDB entry 9QXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	E	372	373	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	100	103	anti-parallel
Strand 3	E	94	97	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	428	429	first strand
Strand 2	E	486	487	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	471	first strand
Strand 2	E	477	484	anti-parallel
Strand 3	B	1074	1084	anti-parallel
Strand 4	B	1064	1071	anti-parallel
Strand 5	B	39	42	parallel
Strand 6	B	1045	1050	parallel
Strand 7	B	1017	1020	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	A	107	116	anti-parallel
Strand 4	A	119	128	anti-parallel
Strand 5	A	140	146	anti-parallel
Strand 6	A	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	26	29	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1020	first strand
Strand 2	A	1045	1050	parallel
Strand 3	A	39	42	parallel
Strand 4	A	1064	1071	parallel
Strand 5	A	1074	1081	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	898	first strand
Strand 2	A	960	968	anti-parallel
Strand 3	A	974	978	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	106	116	anti-parallel
Strand 4	B	119	129	anti-parallel
Strand 5	B	140	146	anti-parallel
Strand 6	B	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	898	first strand
Strand 2	B	960	968	anti-parallel
Strand 3	B	974	976	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	99	104	anti-parallel
Strand 3	H	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	157	first strand
Strand 2	H	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	62	first strand
Strand 2	I	99	104	anti-parallel
Strand 3	I	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	124	first strand
Strand 2	j	372	373	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	157	first strand
Strand 2	I	203	204	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	48	49	first strand
Strand 2	j	100	103	anti-parallel
Strand 3	j	94	97	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	461	471	first strand
Strand 2	j	477	484	anti-parallel
Strand 3	G	1074	1084	anti-parallel
Strand 4	G	1064	1071	anti-parallel
Strand 5	G	39	42	parallel
Strand 6	G	1045	1050	parallel
Strand 7	G	1017	1020	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	33	first strand
Strand 2	F	14	23	anti-parallel
Strand 3	F	107	116	anti-parallel
Strand 4	F	119	128	anti-parallel
Strand 5	F	140	146	anti-parallel
Strand 6	F	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1017	1018	first strand
Strand 2	F	1045	1050	parallel
Strand 3	F	39	42	parallel
Strand 4	F	1064	1071	parallel
Strand 5	F	1074	1081	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	890	898	first strand
Strand 2	F	960	968	anti-parallel
Strand 3	F	974	978	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	33	first strand
Strand 2	G	14	23	anti-parallel
Strand 3	G	106	116	anti-parallel
Strand 4	G	119	129	anti-parallel
Strand 5	G	140	146	anti-parallel
Strand 6	G	178	181	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	890	898	first strand
Strand 2	G	960	968	anti-parallel
Strand 3	G	974	976	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXS