Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QXV entry

There are 8 chains in PDB entry 9QXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 40	THR 234
D	SER 40	THR 234
E	MET 1	GLU 498
J	MET 1	GLY 320
P	A 1	T 60
Q	A 1	T 60
A	MET 1	ALA 1095
B	MET 1	ALA 1095

There are114 helices in PDB entry 9QXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	45	59	Right-handed alpha
Helix 2	AA2	C	66	76	Right-handed alpha
Helix 3	AA3	C	76	85	Right-handed alpha
Helix 4	AA4	C	113	117	Right-handed 310
Helix 5	AA5	C	126	148	Right-handed alpha
Helix 6	AA6	C	158	170	Right-handed alpha
Helix 7	AA7	C	174	192	Right-handed alpha
Helix 8	AA8	C	209	214	Right-handed alpha
Helix 9	AA9	C	215	234	Right-handed alpha
Helix 10	AB1	D	45	59	Right-handed alpha
Helix 11	AB2	D	66	76	Right-handed alpha
Helix 12	AB3	D	76	85	Right-handed alpha
Helix 13	AB4	D	126	148	Right-handed alpha
Helix 14	AB5	D	158	170	Right-handed alpha
Helix 15	AB6	D	174	192	Right-handed alpha
Helix 16	AB7	D	207	213	Right-handed 310
Helix 17	AB8	D	215	233	Right-handed alpha
Helix 18	AB9	E	2	19	Right-handed alpha
Helix 19	AC1	E	19	26	Right-handed alpha
Helix 20	AC2	E	29	43	Right-handed alpha
Helix 21	AC3	E	49	64	Right-handed alpha
Helix 22	AC4	E	65	67	Right-handed 310
Helix 23	AC5	E	76	91	Right-handed alpha
Helix 24	AC6	E	104	116	Right-handed alpha
Helix 25	AC7	E	125	144	Right-handed alpha
Helix 26	AC8	E	146	170	Right-handed alpha
Helix 27	AC9	E	179	193	Right-handed alpha
Helix 28	AD1	E	193	218	Right-handed alpha
Helix 29	AD2	E	223	241	Right-handed alpha
Helix 30	AD3	E	241	256	Right-handed alpha
Helix 31	AD4	E	257	273	Right-handed alpha
Helix 32	AD5	E	273	280	Right-handed alpha
Helix 33	AD6	E	281	290	Right-handed alpha
Helix 34	AD7	E	290	318	Right-handed alpha
Helix 35	AD8	E	322	341	Right-handed alpha
Helix 36	AD9	E	346	351	Right-handed alpha
Helix 37	AE1	E	368	372	Right-handed 310
Helix 38	AE2	E	393	397	Right-handed 310
Helix 39	AE3	E	398	406	Right-handed alpha
Helix 40	AE4	E	409	425	Right-handed alpha
Helix 41	AE5	E	429	437	Right-handed alpha
Helix 42	AE6	E	442	456	Right-handed alpha
Helix 43	AE7	E	488	494	Right-handed alpha
Helix 44	AE8	J	4	19	Right-handed alpha
Helix 45	AE9	J	19	26	Right-handed alpha
Helix 46	AF1	J	29	42	Right-handed alpha
Helix 47	AF2	J	50	64	Right-handed alpha
Helix 48	AF3	J	67	71	Right-handed 310
Helix 49	AF4	J	76	91	Right-handed alpha
Helix 50	AF5	J	104	116	Right-handed alpha
Helix 51	AF6	J	127	144	Right-handed alpha
Helix 52	AF7	J	146	170	Right-handed alpha
Helix 53	AF8	J	177	195	Right-handed alpha
Helix 54	AF9	J	198	217	Right-handed alpha
Helix 55	AG1	J	223	225	Right-handed 310
Helix 56	AG2	J	226	239	Right-handed alpha
Helix 57	AG3	J	241	255	Right-handed alpha
Helix 58	AG4	J	256	273	Right-handed alpha
Helix 59	AG5	J	273	280	Right-handed alpha
Helix 60	AG6	J	281	290	Right-handed alpha
Helix 61	AG7	J	290	318	Right-handed alpha
Helix 62	AG8	A	4	9	Right-handed alpha
Helix 63	AG9	A	48	58	Right-handed alpha
Helix 64	AH1	A	79	86	Right-handed alpha
Helix 65	AH2	A	135	139	Right-handed 310
Helix 66	AH3	A	152	163	Right-handed alpha
Helix 67	AH4	A	164	175	Right-handed alpha
Helix 68	AH5	A	183	195	Right-handed alpha
Helix 69	AH6	A	198	210	Right-handed alpha
Helix 70	AH7	A	216	225	Right-handed alpha
Helix 71	AH8	A	231	287	Right-handed alpha
Helix 72	AH9	A	288	342	Right-handed alpha
Helix 73	AI1	A	690	742	Right-handed alpha
Helix 74	AI2	A	746	755	Right-handed alpha
Helix 75	AI3	A	767	806	Right-handed alpha
Helix 76	AI4	A	811	815	Right-handed 310
Helix 77	AI5	A	818	820	Right-handed 310
Helix 78	AI6	A	821	836	Right-handed alpha
Helix 79	AI7	A	837	839	Right-handed 310
Helix 80	AI8	A	840	882	Right-handed alpha
Helix 81	AI9	A	901	918	Right-handed alpha
Helix 82	AJ1	A	924	944	Right-handed alpha
Helix 83	AJ2	A	947	955	Right-handed alpha
Helix 84	AJ3	A	956	960	Right-handed 310
Helix 85	AJ4	A	985	1006	Right-handed alpha
Helix 86	AJ5	A	1022	1027	Right-handed 310
Helix 87	AJ6	A	1028	1042	Right-handed alpha
Helix 88	AJ7	A	1055	1062	Right-handed alpha
Helix 89	AJ8	A	1082	1095	Right-handed alpha
Helix 90	AJ9	B	3	10	Right-handed alpha
Helix 91	AK1	B	48	58	Right-handed alpha
Helix 92	AK2	B	67	72	Right-handed alpha
Helix 93	AK3	B	79	85	Right-handed alpha
Helix 94	AK4	B	135	139	Right-handed 310
Helix 95	AK5	B	152	163	Right-handed alpha
Helix 96	AK6	B	164	175	Right-handed alpha
Helix 97	AK7	B	183	196	Right-handed alpha
Helix 98	AK8	B	198	210	Right-handed alpha
Helix 99	AK9	B	216	225	Right-handed alpha
Helix 100	AL1	B	231	340	Right-handed alpha
Helix 101	AL2	B	690	742	Right-handed alpha
Helix 102	AL3	B	746	757	Right-handed alpha
Helix 103	AL4	B	764	766	Right-handed 310
Helix 104	AL5	B	767	808	Right-handed alpha
Helix 105	AL6	B	818	820	Right-handed 310
Helix 106	AL7	B	821	854	Right-handed alpha
Helix 107	AL8	B	855	882	Right-handed alpha
Helix 108	AL9	B	901	918	Right-handed alpha
Helix 109	AM1	B	924	944	Right-handed alpha
Helix 110	AM2	B	947	955	Right-handed alpha
Helix 111	AM3	B	956	958	Right-handed 310
Helix 112	AM4	B	987	1006	Right-handed alpha
Helix 113	AM5	B	1028	1042	Right-handed alpha
Helix 114	AM6	B	1054	1062	Right-handed alpha

There are 15 sheets in PDB entry 9QXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	89	94	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	203	205	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	89	94	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	203	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	100	103	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	460	471	first strand
Strand 2	E	477	485	anti-parallel
Strand 3	B	1074	1083	anti-parallel
Strand 4	B	1064	1071	anti-parallel
Strand 5	B	39	42	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	49	first strand
Strand 2	J	100	101	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	23	anti-parallel
Strand 3	A	107	116	anti-parallel
Strand 4	A	119	122	anti-parallel
Strand 5	A	140	146	anti-parallel
Strand 6	A	178	181	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	23	anti-parallel
Strand 3	A	107	116	anti-parallel
Strand 4	A	125	128	anti-parallel
Strand 5	A	140	146	anti-parallel
Strand 6	A	178	181	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1020	first strand
Strand 2	A	1045	1050	parallel
Strand 3	A	39	42	parallel
Strand 4	A	1064	1070	parallel
Strand 5	A	1075	1081	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	895	first strand
Strand 2	A	963	968	anti-parallel
Strand 3	A	974	978	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	106	116	anti-parallel
Strand 4	B	119	122	anti-parallel
Strand 5	B	140	146	anti-parallel
Strand 6	B	178	181	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	23	anti-parallel
Strand 3	B	106	116	anti-parallel
Strand 4	B	125	129	anti-parallel
Strand 5	B	140	146	anti-parallel
Strand 6	B	178	181	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	890	898	first strand
Strand 2	B	960	968	anti-parallel
Strand 3	B	974	976	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1018	1019	first strand
Strand 2	B	1046	1047	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QXV