Analysis of interatomic Contacts of Structural Units in PDB entry:
9QY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QY8 entry

There are 2 chains in PDB entry 9QY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 49	CYS 372
B	TYR 50	CYS 372

There are 34 helices in PDB entry 9QY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	75	Right-handed alpha
Helix 2	AA2	A	76	84	Right-handed alpha
Helix 3	AA3	A	91	98	Right-handed alpha
Helix 4	AA4	A	98	112	Right-handed alpha
Helix 5	AA5	A	120	130	Right-handed alpha
Helix 6	AA6	A	139	155	Right-handed alpha
Helix 7	AA7	A	157	169	Right-handed alpha
Helix 8	AA8	A	208	217	Right-handed alpha
Helix 9	AA9	A	282	284	Right-handed 310
Helix 10	AB1	A	413	428	Right-handed alpha
Helix 11	AB2	A	436	448	Right-handed alpha
Helix 12	AB3	A	463	473	Right-handed alpha
Helix 13	AB4	A	487	489	Right-handed 310
Helix 14	AB5	A	490	496	Right-handed alpha
Helix 15	AB6	A	510	523	Right-handed alpha
Helix 16	AB7	A	343	349	Right-handed alpha
Helix 17	AB8	A	350	352	Right-handed 310
Helix 18	AB9	B	65	75	Right-handed alpha
Helix 19	AC1	B	76	84	Right-handed alpha
Helix 20	AC2	B	91	98	Right-handed alpha
Helix 21	AC3	B	98	112	Right-handed alpha
Helix 22	AC4	B	120	130	Right-handed alpha
Helix 23	AC5	B	139	155	Right-handed alpha
Helix 24	AC6	B	157	169	Right-handed alpha
Helix 25	AC7	B	208	217	Right-handed alpha
Helix 26	AC8	B	282	284	Right-handed 310
Helix 27	AC9	B	413	428	Right-handed alpha
Helix 28	AD1	B	436	448	Right-handed alpha
Helix 29	AD2	B	463	473	Right-handed alpha
Helix 30	AD3	B	487	489	Right-handed 310
Helix 31	AD4	B	490	496	Right-handed alpha
Helix 32	AD5	B	510	523	Right-handed alpha
Helix 33	AD6	B	343	349	Right-handed alpha
Helix 34	AD7	B	350	352	Right-handed 310

There are 12 sheets in PDB entry 9QY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	117	118	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	170	178	anti-parallel
Strand 3	A	239	245	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	251	256	parallel
Strand 3	A	361	370	anti-parallel
Strand 4	A	301	311	anti-parallel
Strand 5	A	278	280	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	251	256	parallel
Strand 3	A	361	370	anti-parallel
Strand 4	A	301	311	anti-parallel
Strand 5	A	318	324	anti-parallel
Strand 6	A	331	335	anti-parallel
Strand 7	A	338	342	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	265	268	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	406	410	parallel
Strand 3	A	451	455	parallel
Strand 4	A	482	486	parallel
Strand 5	A	503	506	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	117	118	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	191	first strand
Strand 2	B	170	178	anti-parallel
Strand 3	B	239	245	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	251	256	parallel
Strand 3	B	361	369	anti-parallel
Strand 4	B	301	311	anti-parallel
Strand 5	B	278	280	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	251	256	parallel
Strand 3	B	361	369	anti-parallel
Strand 4	B	301	311	anti-parallel
Strand 5	B	318	324	anti-parallel
Strand 6	B	331	335	anti-parallel
Strand 7	B	338	342	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	265	268	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	406	410	parallel
Strand 3	B	451	455	parallel
Strand 4	B	482	486	parallel
Strand 5	B	503	506	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QY8